RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 OR1E1P30953 314 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 ACVRL1P37023 503 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 RPS14P62263 151 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 STARD3Q14849 445 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 CCDC6Q16204 474 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 ACBD5Q5T8D3 534 aaPredicted RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 PMS2CLQ68D20 193 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 LAIR1Q6GTX8 287 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 RWDD4Q6NW29 188 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 KIAA1324Q6UXG2 1013 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 LINGO4Q6UY18 593 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 SETD3Q86TU7 594 aaPredicted RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 VPS36Q86VN1 386 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 TMEFF1Q8IYR6 380 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 KDM1BQ8NB78 822 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 PTPRN2Q92932 1015 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 TRIM11Q96F44 468 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 MRFAP1L1Q96HT8 127 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 KCTD15Q96SI1 283 aaPredicted RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 MUC3BQ9H195 1237 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 NHEJ1Q9H9Q4 299 aaPredicted RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 MRPL47Q9HD33 250 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 ITM2CQ9NQX7 267 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 USP36Q9P275 1121 aaKnown RBP11.44□□□□□ -0.58
VRK3-210ENST00000596121 DNAI1Q9UI46 699 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 VPS51Q9UID3 782 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 VPS28Q9UK41 221 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 SCINQ9Y6U3 715 aa11.44□□□□□ -0.58
VRK3-210ENST00000596121 ILVBLA1L0T0 632 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 RNF103O00237 685 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 ATP9BO43861 1147 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 CREB3O43889 395 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 ZNF821O75541 412 aaPredicted RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 EPN2O95208 641 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 MOCS3O95396 460 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 RETP07949 1114 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 RHOQP17081 205 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 PTGER3P43115 390 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 VASPP50552 380 aaPredicted RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 TPMTP51580 245 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 OXCT1P55809 520 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 GNA12Q03113 381 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SULT2A1Q06520 285 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SPEM2Q0P670 501 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 NUMA1Q14980 2115 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 EFHC2Q5JST6 749 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 C6orf118Q5T5N4 469 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 METTL3Q86U44 580 aaKnown RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 SLC41A1Q8IVJ1 513 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 STK40Q8N2I9 435 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 TBC1D31Q96DN5 1066 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SIPA1Q96FS4 1042 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SPON2Q9BUD6 331 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SNRNP25Q9BV90 132 aaKnown RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 ACE2Q9BYF1 805 aaPredicted RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 KLC2Q9H0B6 622 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 RSPH9Q9H1X1 276 aaPredicted RBP11.43□□□□□ -0.58
VRK3-210ENST00000596121 ARRDC1-AS1Q9H2J1 176 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SMOC1Q9H4F8 434 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 TMEM248Q9NWD8 314 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 NCDNQ9UBB6 729 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 SUN2Q9UH99 717 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 AP4E1Q9UPM8 1137 aa11.43□□□□□ -0.58
VRK3-210ENST00000596121 AKR1B10O60218 316 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 IGLV3-19P01714 112 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 SRCP12931 536 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 EPHB2P29323 1055 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 PCK1P35558 622 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 METAP1P53582 386 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ST8SIA6P61647 398 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ARF5P84085 180 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 E2F5Q15329 346 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 DLG2Q15700 870 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 KCNT1Q5JUK3 1230 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ERMARDQ5T6L9 678 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ZNF783Q6ZMS7 281 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ARMCX6Q7L4S7 300 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 CNGA4Q8IV77 575 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 SH2D3CQ8N5H7 860 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 RTL3Q8N8U3 475 aaKnown RBP11.42□□□□□ -0.58
VRK3-210ENST00000596121 DCAF4L2Q8NA75 395 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 NETO2Q8NC67 525 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 PRCCQ92733 491 aaPredicted RBP11.42□□□□□ -0.58
VRK3-210ENST00000596121 ARHGEF2Q92974 986 aaKnown RBP11.42□□□□□ -0.58
VRK3-210ENST00000596121 VOPP1Q96AW1 172 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 DHX35Q9H5Z1 703 aaKnown RBP11.42□□□□□ -0.58
VRK3-210ENST00000596121 OSGEPQ9NPF4 335 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 TMEM74BQ9NUR3 256 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ZNHIT6Q9NWK9 470 aaKnown RBP11.42□□□□□ -0.58
VRK3-210ENST00000596121 WSB2Q9NYS7 404 aaPredicted RBP11.42□□□□□ -0.58
VRK3-210ENST00000596121 SERGEFQ9UGK8 458 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 ANAPC7Q9UJX3 599 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 RAB23Q9ULC3 237 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 USP18Q9UMW8 372 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 HS3ST2Q9Y278 367 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 CEP250Q9BV73 2442 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 PLXND1Q9Y4D7 1925 aa11.42□□□□□ -0.58
VRK3-210ENST00000596121 THADAQ6YHU6 1953 aa11.41□□□□□ -0.58
VRK3-210ENST00000596121 CHD5Q8TDI0 1954 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms