RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MEI4A8MW99 385 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CAPN5O15484 640 aaPredicted RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 TEX33O43247 280 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 TPM3P06753 285 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 KRT3P12035 628 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 PDGFRAP16234 1089 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CHRNB2P17787 502 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 TNFAIP3P21580 790 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 HOXD12P35452 270 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 FLT3P36888 993 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CDH4P55283 916 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ECT2LQ008S8 904 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ZBTB16Q05516 673 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ZNF33AQ06730 810 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 IQCB1Q15051 598 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 SF3A2Q15428 464 aaKnown RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 PTPRNQ16849 979 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 PLEKHG6Q3KR16 790 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 FSCBQ5H9T9 825 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 WDR45BQ5MNZ6 344 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 SYCP2LQ5T4T6 812 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 C6orf118Q5T5N4 469 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 SFMBT2Q5VUG0 894 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ZNF776Q68DI1 518 aaPredicted RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 DNAJC24Q6P3W2 148 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ARCQ7LC44 396 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 APTXQ7Z2E3 356 aaKnown RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 CIR1Q86X95 450 aaPredicted RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 PHF13Q86YI8 300 aaPredicted RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 SYT12Q8IV01 421 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 RGL4Q8IZJ4 473 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 EMC1Q8N766 993 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 FRMD1Q8N878 549 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ZNF366Q8N895 744 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 SLC30A5Q8TAD4 765 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CEP76Q8TAP6 659 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 GANCQ8TET4 914 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 RXFP2Q8WXD0 754 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 MYEOVQ96EZ4 313 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CFAP57Q96MR6 1250 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 PRMT1Q99873 361 aaKnown RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 FUCA2Q9BTY2 467 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 NUSAP1Q9BXS6 441 aaKnown RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 MKRN2Q9H000 416 aaKnown RBP8.34□□□□□ -1.07
VPS53-214ENST00000572607 SLC6A17Q9H1V8 727 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 TMEM245Q9H330 911 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CBX8Q9HC52 389 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 CD248Q9HCU0 757 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ITM2CQ9NQX7 267 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 RXFP3Q9NSD7 469 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ARHGEF38Q9NXL2 777 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 SUSD2Q9UGT4 822 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 SLC25A13Q9UJS0 675 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 TMEM59LQ9UK28 342 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 NCKAP1Q9Y2A7 1128 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ATG2BQ96BY7 2078 aa8.34□□□□□ -1.07
VPS53-214ENST00000572607 ATXN2Q99700 1313 aaKnown RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 DMXL2Q8TDJ6 3036 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 MYOFQ9NZM1 2061 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 A0A1B0GTH6 734 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 EDDM13A0A1B0GTR0 161 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 TARSL2A2RTX5 802 aaKnown RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 LRRC53A6NM62 1247 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 ADCY5O95622 1261 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 RHOCP08134 193 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 UNGP13051 313 aaPredicted RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 GNSP15586 552 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 GPD1P21695 349 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 PTGER3P43115 390 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 COPAP53621 1224 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 LIMK1P53667 647 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 ATXN3P54252 364 aaPredicted RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 GSCP56915 257 aaPredicted RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 KRT83P78385 493 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 ATP11AP98196 1134 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 CAMK2GQ13555 558 aaPredicted RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 CDO1Q16878 200 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 HNRNPA1L2Q32P51 320 aaKnown RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 TRIM61Q5EBN2 209 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 OTUD1Q5VV17 481 aaPredicted RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 ACAD10Q6JQN1 1059 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 DCUN1D2Q6PH85 259 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 STRADAQ7RTN6 431 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 TRIM46Q7Z4K8 759 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 PHLDB2Q86SQ0 1253 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 FAM131BQ86XD5 332 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 DEFB119Q8N690 84 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 C3orf20Q8ND61 904 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 NBEAQ8NFP9 2946 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 IGSF8Q969P0 613 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 NT5C3BQ969T7 300 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 IQCDQ96DY2 449 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 TOE1Q96GM8 510 aaKnown RBP8.33□□□□□ -1.08
VPS53-214ENST00000572607 LMLNQ96KR4 655 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 C1orf74Q96LT6 269 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 HSPA12BQ96MM6 686 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 HAPLN3Q96S86 360 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 PCDHB18PQ96TA0 734 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 EDEM2Q9BV94 578 aa8.33□□□□□ -1.08
VPS53-214ENST00000572607 NUP58Q9BVL2 599 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms