RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FTLP02792 175 aaPredicted RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 C8AP07357 584 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 SYN1P17600 705 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CD86P42081 329 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CDK7P50613 346 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CLCN2P51788 898 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 MAP2K6P52564 334 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 E2F5Q15329 346 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 SMAD1Q15797 465 aaKnown RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 UBE2SQ16763 222 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CCDC157Q569K6 752 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CELF3Q5SZQ8 465 aaKnown RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 GPR139Q6DWJ6 353 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 LIN54Q6MZP7 749 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 METTL7BQ6UX53 244 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 FAM47EQ6ZV65 393 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 BEND5Q7L4P6 421 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 FAM124AQ86V42 546 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 LYSMD2Q8IV50 215 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 KLHL36Q8N4N3 616 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 TRIML1Q8N9V2 468 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 ATP11CQ8NB49 1132 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CEP70Q8NHQ1 597 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 CYP2W1Q8TAV3 490 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 AFG1LQ8WV93 481 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 FATE1Q969F0 183 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 GFM2Q969S9 779 aaKnown RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 AJUBAQ96IF1 538 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 SPATA33Q96N06 139 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 INPP4AQ96PE3 977 aaPredicted RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 ACE2Q9BYF1 805 aaPredicted RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 ZMYND12Q9H0C1 365 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 OR10A4Q9H209 315 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 LIMCH1Q9UPQ0 1083 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 DDX49Q9Y6V7 483 aaKnown RBP6.47□□□□□ -1.37
VPS53-212ENST00000572259 FRMPD4Q14CM0 1322 aa6.47□□□□□ -1.37
VPS53-212ENST00000572259 A0A1W2PPL8 197 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 LRRC37A2A6NM11 1700 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 MYO1FO00160 1098 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 KIAA0355O15063 1070 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 CTAGE5O15320 804 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 TSPAN3O60637 253 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 PLATP00750 562 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 TIMP1P01033 207 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 MMP3P08254 477 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 ITGA5P08648 1049 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 CELA3BP08861 270 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 ACADMP11310 421 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 BRAFP15056 766 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 ATP5F1P24539 256 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 CASQ1P31415 396 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 MAGEA10P43363 369 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 RRADP55042 308 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 FMO1Q01740 532 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 ARHGAP1Q07960 439 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 BFSP2Q13515 415 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 USP10Q14694 798 aaKnown RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 CEP55Q53EZ4 464 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 SETMARQ53H47 684 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 TRIM68Q6AZZ1 485 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 KLHDC10Q6PID8 442 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 USP51Q70EK9 711 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 GAREM2Q75VX8 874 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 NIPA1Q7RTP0 329 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 DNAJB7Q7Z6W7 309 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 SESTD1Q86VW0 696 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 NLRP14Q86W24 1093 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 ZNF761Q86XN6 746 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 GLB1L2Q8IW92 636 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 OR8H3Q8N146 312 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 TMEM199Q8N511 208 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 THAP4Q8WY91 577 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 SEPT1Q8WYJ6 367 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 GDF15Q99988 308 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 MXRA8Q9BRK3 442 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 MTIF3Q9H2K0 278 aaKnown RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 SYNCQ9H7C4 482 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 DOCK5Q9H7D0 1870 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 SERHLQ9NQF3 203 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 CCDC177Q9NQR7 707 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 HPF1Q9NWY4 346 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 TRMT1Q9NXH9 659 aaKnown RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 RPS6KA6Q9UK32 745 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 ZNF215Q9UL58 517 aaPredicted RBP6.46□□□□□ -1.38
VPS53-212ENST00000572259 VWA7Q9Y334 891 aa6.46□□□□□ -1.38
VPS53-212ENST00000572259 hCG_1807616A0A1W2PRN6 198 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 MROH6A6NGR9 719 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 AQP12BA6NM10 295 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 GTPBP1O00178 669 aaKnown RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 PLOD2O00469 737 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 SLC7A4O43246 635 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TSPAN9O75954 239 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 GOSR1O95249 250 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 CYP3A4P08684 503 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 SRGAP2BP0DMP2 458 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 NR2F1P10589 423 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 KRT10P13645 584 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 UBA1P22314 1058 aaKnown RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 SLC7A1P30825 629 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 SREBF1P36956 1147 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms