RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 COMMD8Q9NX08 183 aa8.96□□□□□ -0.98
LINC00558-201ENST00000569422 VANGL2Q9ULK5 521 aa8.96□□□□□ -0.98
LINC00558-201ENST00000569422 HACD1B0YJ81 288 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 MSI1O43347 362 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 TPBGLP0DKB5 382 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SLC1A6P48664 564 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 PURAQ00577 322 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 OCRLQ01968 901 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 USP4Q13107 963 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SDHAF4Q5VUM1 108 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SDE2Q6IQ49 451 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 C4orf22Q6V702 233 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 C4orf50Q6ZRC1 276 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 TRIM42Q8IWZ5 723 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 PLD6Q8N2A8 252 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SPATA6LQ8N4H0 392 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 DCLK2Q8N568 766 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 PNPLA1Q8N8W4 532 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 HIPK4Q8NE63 616 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 ZNF398Q8TD17 642 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 MYLPFQ96A32 169 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 PPP1R10Q96QC0 940 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 COLEC11Q9BWP8 271 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 OXCT2Q9BYC2 517 aaPredicted RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 AGO3Q9H9G7 860 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 CYP4F11Q9HBI6 524 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 WDR6Q9NNW5 1121 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 BFARQ9NZS9 450 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SIRPGQ9P1W8 387 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 HBS1LQ9Y450 684 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 ARHGAP42A6NI28 874 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 DNAJC6O75061 913 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 ZMPSTE24O75844 475 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 LRIG2O94898 1065 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 TGDSO95455 350 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 MT-CYBP00156 380 aaPredicted RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 OR4Q2P0C623 313 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 GNAT1P11488 350 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 CD52P31358 61 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 THPOP40225 353 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 PTDSS1P48651 473 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 ARL13BQ3SXY8 428 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 ACSBG2Q5FVE4 666 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 GDF6Q6KF10 455 aaPredicted RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 MYLK4Q86YV6 388 aaPredicted RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 WDR75Q8IWA0 830 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 RBM15BQ8NDT2 890 aaKnown RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SHKBP1Q8TBC3 707 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 STMN2Q93045 179 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 WWP1Q9H0M0 922 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 FAM124BQ9H5Z6 455 aaPredicted RBP8.95□□□□□ -0.98
LINC00558-201ENST00000569422 SNX15Q9NRS6 342 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 EMCNQ9ULC0 261 aa8.95□□□□□ -0.98
LINC00558-201ENST00000569422 PABPN1LA6NDY0 278 aaKnown RBP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 DCLK1O15075 740 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 DPYSQ14117 519 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 POU6F1Q14863 301 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 TEX44Q53QW1 395 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 ATG14Q6ZNE5 492 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 ZNF354CQ86Y25 554 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 PSTKQ8IV42 348 aaKnown RBP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 SCN4BQ8IWT1 228 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 CFAP61Q8NHU2 1237 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 TMLHEQ9NVH6 421 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 KCNK4Q9NYG8 393 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 SLC39A10Q9ULF5 831 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 GABRDO14764 452 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 PHGDHO43175 533 aaKnown RBP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 PLIN3O60664 434 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 NEBLO76041 1014 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 BAG2O95816 211 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 CD68P34810 354 aaPredicted RBP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 CCNFP41002 786 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 GLUD2P49448 558 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 MRPS6P82932 125 aaKnown RBP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 SLC25A3Q00325 362 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 NIPAL4Q0D2K0 466 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 MUM1Q2TAK8 710 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 MORN1Q5T089 497 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 TLDC1Q6P9B6 456 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 AGMOQ6ZNB7 445 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 PDZD4Q76G19 769 aaPredicted RBP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 SAPCD2Q86UD0 394 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 TAC4Q86UU9 113 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.94□□□□□ -0.98
LINC00558-201ENST00000569422 IPMKQ8NFU5 416 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 PPP4R1Q8TF05 950 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 MPP4Q96JB8 637 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 C7orf26Q96N11 449 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 APBA2Q99767 749 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 THAP1Q9NVV9 213 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 FBXW11Q9UKB1 542 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 DOCK3Q8IZD9 2030 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 GOLGA8QA0A0J9YX86 632 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 GOLGA8OA6NCC3 632 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 SPECC1L-ADORA2AF8WAN1 911 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 GOLGA8NF8WBI6 632 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 HAS3O00219 553 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 GLRA3O75311 464 aa8.94□□□□□ -0.98
LINC00558-201ENST00000569422 CHRNA1P02708 482 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms