RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.7■□□□□ 0.26
CLK3-223ENST00000568488 LUC7L3O95232 432 aaKnown RBP16.7■□□□□ 0.26
CLK3-223ENST00000568488 TRIM49P0CI25 452 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 TRIM49CP0CI26 452 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 ZNF18P17022 549 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 ITGB6P18564 788 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 AFMP43652 599 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 ZNF177Q13360 481 aaPredicted RBP16.7■□□□□ 0.26
CLK3-223ENST00000568488 STK38Q15208 465 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 ACCSLQ4AC99 568 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 DCAF6Q58WW2 860 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 DSG4Q86SJ6 1040 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 WDR36Q8NI36 951 aaKnown RBP16.7■□□□□ 0.26
CLK3-223ENST00000568488 UBA3Q8TBC4 463 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 SGF29Q96ES7 293 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 TSPAN16Q9UKR8 245 aa16.7■□□□□ 0.26
CLK3-223ENST00000568488 ATXN7L1Q9ULK2 861 aaPredicted RBP16.7■□□□□ 0.26
CLK3-223ENST00000568488 A0A1W2PQU0 124 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 IGLV3-27P01718 113 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 SFTPCP11686 197 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 INHBCP55103 352 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 CLDN2P57739 230 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 TLE1Q04724 770 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 PPP3CAQ08209 521 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 CUL4BQ13620 913 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 MS4A13Q5J8X5 152 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 AGBL4Q5VU57 503 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 GUSBP11Q6P575 273 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 CLEC14AQ86T13 490 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 TTC39CQ8N584 583 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 TMEM145Q8NBT3 493 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 AZIN2Q96A70 460 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 FAM131CQ96AQ9 280 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 NOX5Q96PH1 765 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 NUCKS1Q9H1E3 243 aaKnown RBP16.69■□□□□ 0.26
CLK3-223ENST00000568488 SYNDIG1Q9H7V2 258 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 HESX1Q9UBX0 185 aa16.69■□□□□ 0.26
CLK3-223ENST00000568488 AHCTF1Q8WYP5 2266 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 PVALEFA0A1B0GWK0 134 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 C1QTNF3-AMACRE9PGA6 284 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 PIK3R2O00459 728 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 BNIP3LO60238 219 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 LZTS3O60299 673 aaPredicted RBP16.68■□□□□ 0.26
CLK3-223ENST00000568488 PDCP20941 246 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 AKT2P31751 481 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 DAOAP59103 153 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 HNRNPKP61978 463 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLK3-223ENST00000568488 NUCB2P80303 420 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 ZCCHC8Q6NZY4 707 aaKnown RBP16.68■□□□□ 0.26
CLK3-223ENST00000568488 MSANTD2Q6P1R3 559 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 JAMLQ86YT9 394 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 TPCN2Q8NHX9 752 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 PREBQ9HCU5 417 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 DACH1Q9UI36 760 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 MORC2Q9Y6X9 1032 aaPredicted RBP16.68■□□□□ 0.26
CLK3-223ENST00000568488 BSNQ9UPA5 3926 aa16.68■□□□□ 0.26
CLK3-223ENST00000568488 FLNCQ14315 2725 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 CCDC187A0A096LP49 1063 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 POLR2DO15514 142 aaKnown RBP16.67■□□□□ 0.26
CLK3-223ENST00000568488 MOCS2O96007 188 aaPredicted RBP16.67■□□□□ 0.26
CLK3-223ENST00000568488 ITGB2P05107 769 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 PDIA4P13667 645 aaKnown RBP16.67■□□□□ 0.26
CLK3-223ENST00000568488 BST2Q10589 180 aaKnown RBP16.67■□□□□ 0.26
CLK3-223ENST00000568488 STK4Q13043 487 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 SRSF6Q13247 344 aaKnown RBP16.67■□□□□ 0.26
CLK3-223ENST00000568488 DRAP1Q14919 205 aaPredicted RBP16.67■□□□□ 0.26
CLK3-223ENST00000568488 TGIF1Q15583 401 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 OR6B2Q6IFH4 312 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 Q6ZSR6 202 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 LGI2Q8N0V4 545 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 SLC22A18ASQ8N1D0 253 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 KCTD10Q9H3F6 313 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 MAGEF1Q9HAY2 307 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 CNGB3Q9NQW8 809 aa16.67■□□□□ 0.26
CLK3-223ENST00000568488 PDXKO00764 312 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 MUSKO15146 869 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 SPTLC2O15270 562 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 ITGA2BP08514 1039 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 KRT13P13646 458 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 CD19P15391 556 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 PDGFRAP16234 1089 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 HNRNPA2B1P22626 353 aaKnown RBP16.66■□□□□ 0.26
CLK3-223ENST00000568488 MLLT3P42568 568 aaPredicted RBP16.66■□□□□ 0.26
CLK3-223ENST00000568488 RGS7P49802 495 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 TAS2R38P59533 333 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 C4orf17Q53FE4 359 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 PTAR1Q7Z6K3 402 aaPredicted RBP16.66■□□□□ 0.26
CLK3-223ENST00000568488 C14orf80Q86SX3 495 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 ZNF548Q8NEK5 533 aaPredicted RBP16.66■□□□□ 0.26
CLK3-223ENST00000568488 FRS2Q8WU20 508 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 IFT43Q96FT9 208 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 NCKIPSDQ9NZQ3 722 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 UNC79Q9P2D8 2635 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 PPM1HQ9ULR3 514 aa16.66■□□□□ 0.26
CLK3-223ENST00000568488 USP9XQ93008 2570 aaPredicted RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 EME2A4GXA9 379 aaPredicted RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 CASC3O15234 703 aaKnown RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 CALUO43852 315 aaPredicted RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 PPFIA2O75334 1257 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 TCEA3O75764 348 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms