RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 COG7P83436 770 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 OCRLQ01968 901 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 PPP2R5DQ14738 602 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 SPDYAQ5MJ70 313 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 C14orf80Q86SX3 495 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 TRIM42Q8IWZ5 723 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 DCP1BQ8IZD4 617 aaKnown RBP20.7■□□□□ 0.9
CLN3-230ENST00000568076 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-230ENST00000568076 UTP4Q969X6 686 aaKnown RBP20.7■□□□□ 0.9
CLN3-230ENST00000568076 C7orf26Q96N11 449 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 AGAP2Q99490 1192 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 CPNE1Q99829 537 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 CD248Q9HCU0 757 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 CHRAC1Q9NRG0 131 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 HEY2Q9UBP5 337 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 HS3ST4Q9Y661 456 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 MYO16Q9Y6X6 1858 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 MAFKO60675 156 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 ATP5HO75947 161 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 MOCS2O96007 188 aaPredicted RBP20.7■□□□□ 0.9
CLN3-230ENST00000568076 USP46P62068 366 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 IRX4P78413 519 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 FRG1Q14331 258 aaKnown RBP20.7■□□□□ 0.9
CLN3-230ENST00000568076 KYAT3Q6YP21 454 aaKnown RBP20.7■□□□□ 0.9
CLN3-230ENST00000568076 SPATA22Q8NHS9 363 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 SLC7A6OSQ96CW6 309 aaPredicted RBP20.7■□□□□ 0.9
CLN3-230ENST00000568076 LRMDAQ9H2I8 198 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 SCML2Q9UQR0 700 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 FAM237BA0A1B0GVD1 139 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 BIRC5O15392 142 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 FGF10O15520 208 aaPredicted RBP20.69■□□□□ 0.9
CLN3-230ENST00000568076 SNNO75324 88 aaPredicted RBP20.69■□□□□ 0.9
CLN3-230ENST00000568076 PRKCGP05129 697 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 HTR7P34969 479 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 GMPRP36959 345 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 NPY2RP49146 381 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 PPM1JQ5JR12 505 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 VARS2Q5ST30 1063 aaKnown RBP20.69■□□□□ 0.9
CLN3-230ENST00000568076 STXBP5Q5T5C0 1151 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 N4BP2L1Q5TBK1 243 aaPredicted RBP20.69■□□□□ 0.9
CLN3-230ENST00000568076 GRTP1Q5TC63 336 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 ATG16L1Q676U5 607 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 ATPAF2Q8N5M1 289 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 TTC9BQ8N6N2 239 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 AZIN2Q96A70 460 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 SKA1Q96BD8 255 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 PRR11Q96HE9 360 aaPredicted RBP20.69■□□□□ 0.9
CLN3-230ENST00000568076 CATSPERBQ9H7T0 1116 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 STK38LQ9Y2H1 464 aa20.69■□□□□ 0.9
CLN3-230ENST00000568076 MTO1Q9Y2Z2 717 aaKnown RBP20.69■□□□□ 0.9
CLN3-230ENST00000568076 A8MUI8 341 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 E9PAM4 449 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 SERPINB3P29508 390 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 TUBP50607 506 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 PDE1BQ01064 536 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 RIPK1Q13546 671 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 HSF5Q4G112 596 aaPredicted RBP20.68■□□□□ 0.9
CLN3-230ENST00000568076 TEDDM1Q5T9Z0 273 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 ZCCHC23Q6ZST2 131 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 NUP93Q8N1F7 819 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 RAB3IL1Q8TBN0 382 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 RAET1EQ8TD07 263 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 FUBP3Q96I24 572 aaKnown RBP eCLIP20.68■□□□□ 0.9
CLN3-230ENST00000568076 C8orf48Q96LL4 319 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 IL12RB2Q99665 862 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 RBBP8Q99708 897 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 TSEN34Q9BSV6 310 aaKnown RBP20.68■□□□□ 0.9
CLN3-230ENST00000568076 IL22Q9GZX6 179 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 STARD7Q9NQZ5 370 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 FBXO6Q9NRD1 293 aaPredicted RBP20.68■□□□□ 0.9
CLN3-230ENST00000568076 MPP6Q9NZW5 540 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 TXNDC16Q9P2K2 825 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 PLIN3O60664 434 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 GLRA3O75311 464 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 TADA2AO75478 443 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 MT-CYBP00156 380 aaPredicted RBP20.68■□□□□ 0.9
CLN3-230ENST00000568076 MYL2P10916 166 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 CDH17Q12864 832 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 PRPSAP1Q14558 356 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 FASTKD1Q53R41 847 aaKnown RBP20.68■□□□□ 0.9
CLN3-230ENST00000568076 AFMIDQ63HM1 303 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 STRA8Q7Z7C7 330 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 MON1AQ86VX9 555 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 LZTR1Q8N653 840 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 B3GALT6Q96L58 329 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 ZNF778Q96MU6 729 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 SERPINB11Q96P15 392 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 NOD2Q9HC29 1040 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 BAIAP2L1Q9UHR4 511 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 SOX13Q9UN79 622 aa20.68■□□□□ 0.9
CLN3-230ENST00000568076 MATN3O15232 486 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 DNAJC6O75061 913 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 NMBRP28336 390 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 HOXD10P28358 340 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 MAGEA12P43365 314 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 MNAT1P51948 309 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 MLLT6P55198 1093 aaPredicted RBP20.67■□□□□ 0.9
CLN3-230ENST00000568076 GPNMBQ14956 572 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 NFE2Q16621 373 aaPredicted RBP20.67■□□□□ 0.9
CLN3-230ENST00000568076 HSP90AA5PQ58FG0 334 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms