RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZFATQ9P243 1243 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 RIMKLBQ9ULI2 386 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 VANGL2Q9ULK5 521 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CORO1CQ9ULV4 474 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 CHMP2BQ9UQN3 213 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 ARIH1Q9Y4X5 557 aaPredicted RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 INSL6Q9Y581 213 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 MAD1L1Q9Y6D9 718 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 CDY1Q9Y6F8 540 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.69□□□□□ -1.18
VPS39-204ENST00000561818 MICAL3Q7RTP6 2002 aa7.69□□□□□ -1.18
VPS39-204ENST00000561818 NLRC5Q86WI3 1866 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CCDC189A1A4V9 331 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 HEATR9A2RTY3 570 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 FAM159BA6NKW6 160 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 DRGXA6NNA5 263 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 POC1B-GALNT4F8VUJ3 575 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 GOLGA8MH3BSY2 632 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 PRRG1O14668 218 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 KLF11O14901 512 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 LUC7L3O95232 432 aaKnown RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 PAPSS2O95340 614 aaPredicted RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 IL1BP01584 269 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 TROVE2P10155 538 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS39-204ENST00000561818 C7P10643 843 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 ETS1P14921 441 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 VAV1P15498 845 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 IBSPP21815 317 aaPredicted RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 CDC25CP30307 473 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SPRP35270 261 aaPredicted RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 GP5P40197 560 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 PBX3P40426 434 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SLCO1A2P46721 670 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 HK2P52789 917 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 ATXN1P54253 815 aaKnown RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 CACNA2D1P54289 1103 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CDH4P55283 916 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 GUCY1A3Q02108 690 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CDK18Q07002 472 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 WASHC5Q12768 1159 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 ASPHQ12797 758 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SLC10A2Q12908 348 aaPredicted RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 TAF10Q12962 218 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 PDK4Q16654 411 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 FNBP1LQ5T0N5 605 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 MPP7Q5T2T1 576 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 MARC1Q5VT66 337 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 HHATQ5VTY9 493 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 ATG16L1Q676U5 607 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 GALNT7Q86SF2 657 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 TMEM135Q86UB9 458 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CAND1Q86VP6 1230 aaKnown RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 CHSY1Q86X52 802 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CTAGE3PQ8IX95 158 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS39-204ENST00000561818 CCDC197Q8NCU1 140 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SCAMP5Q8TAC9 235 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 LRRC8CQ8TDW0 803 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CKAP2Q8WWK9 683 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SLC39A7Q92504 469 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CASP10Q92851 521 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 APOPT1Q96IL0 206 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SAMD11Q96NU1 681 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 RANBP9Q96S59 729 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 CCT8L2Q96SF2 557 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 LGMNQ99538 433 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 LPIN3Q9BQK8 851 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 POLR1EQ9GZS1 481 aaKnown RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 SLC25A51Q9H1U9 297 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 IL23AQ9NPF7 189 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 PPANQ9NQ55 473 aaKnown RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 CASS4Q9NQ75 786 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 PRDM5Q9NQX1 630 aaPredicted RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 MOCS1Q9NZB8 636 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 SEPT10Q9P0V9 454 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 GMIPQ9P107 970 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 DCDC2Q9UHG0 476 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 LSM7Q9UK45 103 aaKnown RBP7.68□□□□□ -1.18
VPS39-204ENST00000561818 VPS9D1Q9Y2B5 631 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 ATP11BQ9Y2G3 1177 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 LTBP2Q14767 1821 aa7.68□□□□□ -1.18
VPS39-204ENST00000561818 A0A1B0GVM2 712 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SLC12A8A0AV02 714 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 TCAF2A6NFQ2 919 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 COPEO14579 308 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 BIRC5O15392 142 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 MAFKO60675 156 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 GLRA3O75311 464 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ATP5HO75947 161 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 METTL18O95568 372 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 VIMP08670 466 aaKnown RBP7.67□□□□□ -1.18
VPS39-204ENST00000561818 POU2F2P09086 479 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 COL6A2P12110 1019 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 KRT4P19013 534 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 HLA-DPA1P20036 260 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 NFKBIAP25963 317 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 PSMB4P28070 264 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 HOXA9P31269 272 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SERPINB8P50452 374 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 RASSF2P50749 326 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms