RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 FOSL2P15408 326 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CTNNA2P26232 953 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CORO1AP31146 461 aaKnown RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 HOXA9P31269 272 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MAN1A1P33908 653 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CTNNA1P35221 906 aaKnown RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 VIPR2P41587 438 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 PEX5P50542 639 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 TBX4P57082 545 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 SNX16P57768 344 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 ETF1P62495 437 aaKnown RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 DYNLT1P63172 113 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MRPS25P82663 173 aaKnown RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 EIF4EBP2Q13542 120 aaPredicted RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 PIGHQ14442 188 aaPredicted RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 PPP6R3Q5H9R7 873 aaPredicted RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 HECTD3Q5T447 861 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 ZFYVE27Q5T4F4 411 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 PIK3R6Q5UE93 754 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 RAP1GAP2Q684P5 730 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 RNF43Q68DV7 783 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 NADSYN1Q6IA69 706 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MSANTD2Q6P1R3 559 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 RFWD3Q6PCD5 774 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MFSD7Q6UXD7 560 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 C14orf80Q86SX3 495 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MON1AQ86VX9 555 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 TRIM42Q8IWZ5 723 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 TP53INP2Q8IXH6 220 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 GALNT12Q8IXK2 581 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 ELMOD1Q8N336 334 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 TXLNBQ8N3L3 684 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 RNF10Q8N5U6 811 aaKnown RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 DEFB123Q8N688 67 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 TRIM58Q8NG06 486 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 FNIP1Q8TF40 1166 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 RNF139Q8WU17 664 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CENPIQ92674 756 aaPredicted RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 RNF34Q969K3 372 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 NT5C3BQ969T7 300 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 PRICKLE1Q96MT3 831 aaPredicted RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 GCNAQ96QF7 691 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CITED4Q96RK1 184 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MYADMQ96S97 322 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 OSBPL9Q96SU4 736 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CDCA3Q99618 268 aaPredicted RBP5.4□□□□□ -1.54
SPG11-220ENST00000559933 FAM83CQ9BQN1 747 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 HEMGNQ9BXL5 484 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 SLC46A2Q9BY10 475 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 NACA2Q9H009 215 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 TKTL2Q9H0I9 626 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 S1PR5Q9H228 398 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 ADAM7Q9H2U9 754 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 PLEKHA4Q9H4M7 779 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 POMKQ9H5K3 350 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 C10orf88Q9H8K7 445 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 ABCC13Q9NSE7 274 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.4□□□□□ -1.54
SPG11-220ENST00000559933 ETNK2Q9NVF9 386 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 MTMR10Q9NXD2 777 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 ZDHHC7Q9NXF8 308 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.4□□□□□ -1.54
SPG11-220ENST00000559933 AMFRQ9UKV5 643 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 FZD10Q9ULW2 581 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 STAP1Q9ULZ2 295 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 AP4E1Q9UPM8 1137 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 NEU3Q9UQ49 428 aa5.4□□□□□ -1.54
SPG11-220ENST00000559933 CLUHO75153 1309 aa5.4□□□□□ -1.55
SPG11-220ENST00000559933 COL6A3P12111 3177 aa5.4□□□□□ -1.55
SPG11-220ENST00000559933 TMEM265A0A087WTH1 108 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 A0A096LPE4 126 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 A0A1W2PP55 124 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 A0A1W2PPZ6 126 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 HMX2A2RU54 273 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CTAGE9A4FU28 777 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 LEFTY2O00292 366 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PSTPIP1O43586 416 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CREB3O43889 395 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PRPSAP2O60256 369 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CEP104O60308 925 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 TSPAN3O60637 253 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CPNE3O75131 537 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 PAGE1O75459 146 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 STC2O76061 302 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 RNF8O76064 485 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 URI1O94763 535 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 OLFM2O95897 454 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 IGLV3-27P01718 113 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CKMP06732 381 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 HNRNPA1P09651 372 aaKnown RBP eCLIP5.39□□□□□ -1.55
SPG11-220ENST00000559933 RALAP11233 206 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 GOT1P17174 413 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PTPN2P17706 415 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 KCNA5P22460 613 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CDC25CP30307 473 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SLC6A4P31645 630 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PCK1P35558 622 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ATP5C1P36542 298 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 SLC1A1P43005 524 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PREPP48147 710 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms