RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SMIM29Q86T20 159 aa3.62□□□□□ -1.83
SCFD1-218ENST00000556256 PGLYRP2Q96PD5 576 aa3.62□□□□□ -1.83
SCFD1-218ENST00000556256 STRBPQ96SI9 672 aaKnown RBP3.62□□□□□ -1.83
SCFD1-218ENST00000556256 SFXN1Q9H9B4 322 aa3.62□□□□□ -1.83
SCFD1-218ENST00000556256 COL2A1P02458 1487 aaPredicted RBP3.61□□□□□ -1.83
SCFD1-218ENST00000556256 GOLIM4O00461 696 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 ASAP2O43150 1006 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 DAOP14920 347 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 MST1P26927 711 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 SLC5A2P31639 672 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 AMTP48728 403 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 ATP1A4Q13733 1029 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 SAFBQ15424 915 aaKnown RBP eCLIP3.61□□□□□ -1.83
SCFD1-218ENST00000556256 KIAA0753Q2KHM9 967 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 COBLL1Q53SF7 1204 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 DARS2Q6PI48 645 aaKnown RBP3.61□□□□□ -1.83
SCFD1-218ENST00000556256 CCDC149Q6ZUS6 474 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 KRT27Q7Z3Y8 459 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 CCAR1Q8IX12 1150 aaKnown RBP3.61□□□□□ -1.83
SCFD1-218ENST00000556256 LMNTD1Q8N9Z9 388 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 POC1AQ8NBT0 407 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 SPATA20Q8TB22 786 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 BICD2Q8TD16 824 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 NPIPB3Q92617 1050 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 ADAD1Q96M93 576 aaKnown RBP3.61□□□□□ -1.83
SCFD1-218ENST00000556256 SORBS1Q9BX66 1292 aaKnown RBP3.61□□□□□ -1.83
SCFD1-218ENST00000556256 GFRA4Q9GZZ7 299 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 ABHD16BQ9H3Z7 469 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 PCDHB7Q9Y5E2 793 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 SLC4A4Q9Y6R1 1079 aa3.61□□□□□ -1.83
SCFD1-218ENST00000556256 TP53BP1Q12888 1972 aaPredicted RBP3.6□□□□□ -1.83
SCFD1-218ENST00000556256 IGLV5-52A0A0A0MRZ9 124 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 TRBV5-7A0A0A0MS05 114 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 PMM2O15305 246 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 ALDOCP09972 364 aaKnown RBP3.6□□□□□ -1.83
SCFD1-218ENST00000556256 CFC1BP0CG36 223 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 CFC1P0CG37 223 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 PEX2P28328 305 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 KRT2P35908 639 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 TM4SF4P48230 202 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 NUDT6P53370 316 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 MRNIPQ6NTE8 343 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 MDGA2Q7Z553 956 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 NEXN-AS1Q8NBZ9 246 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 NAA15Q9BXJ9 866 aaKnown RBP3.6□□□□□ -1.83
SCFD1-218ENST00000556256 BTBD1Q9H0C5 482 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 GAREM1Q9H706 876 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 FBXO28Q9NVF7 368 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 IL36RNQ9UBH0 155 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 FBXO4Q9UKT5 387 aa3.6□□□□□ -1.83
SCFD1-218ENST00000556256 LINC01553A4QN01 128 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 SAC3D1A6NKF1 404 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 KCNJ18B7U540 433 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 THAP12O43422 761 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 LDB2O43679 373 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 PLIN1O60240 522 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 SOX30O94993 753 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 GNLYP22749 145 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 RHBDL3P58872 404 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 SYCP2LQ5T4T6 812 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 RETSATQ6NUM9 610 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 WDR93Q6P2C0 686 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 TMEM71Q6P5X7 295 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 KIAA0408Q6ZU52 694 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 C11orf96Q7Z7L8 435 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 MYPOPQ86VE0 399 aaPredicted RBP3.59□□□□□ -1.83
SCFD1-218ENST00000556256 EXOC3L1Q86VI1 746 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 CCDC28AQ8IWP9 274 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 ZNF485Q8NCK3 441 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 ADPRHL1Q8NDY3 354 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 CMASQ8NFW8 434 aaPredicted RBP3.59□□□□□ -1.83
SCFD1-218ENST00000556256 NUDT22Q9BRQ3 303 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 OSBPL5Q9H0X9 879 aaPredicted RBP3.59□□□□□ -1.83
SCFD1-218ENST00000556256 GAB2Q9UQC2 676 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 FAM50BQ9Y247 325 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 PCDHGB6Q9Y5F9 930 aa3.59□□□□□ -1.83
SCFD1-218ENST00000556256 NOTCH2Q04721 2471 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 OR2W5A6NFC9 320 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 AREL1O15033 823 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 NPC1O15118 1278 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 MGEA5O60502 916 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 ZG16O60844 167 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 CHRNA5P30532 468 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 HOXC13P31276 330 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 THPOP40225 353 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 NEK3P51956 506 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 TMPRSS3P57727 454 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 PICALMQ13492 652 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 FCN2Q15485 313 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 ZNF284Q2VY69 593 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 C14orf177Q52M58 125 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 RAP1GAP2Q684P5 730 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 IL31Q6EBC2 164 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 ERAP2Q6P179 960 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 AAGABQ6PD74 315 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 FAM185AQ8N0U4 392 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 SAMD3Q8N6K7 520 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 IQCDQ96DY2 449 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 LRRC46Q96FV0 321 aa3.58□□□□□ -1.84
SCFD1-218ENST00000556256 ADGRG7Q96K78 797 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms