RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CCDC187A0A096LP49 1063 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 GXYLT2A0PJZ3 443 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 KIF28PB7ZC32 967 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 H0Y3Z8 333 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 M0QZQ0 153 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 JTBO76095 146 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 LARGE1O95461 756 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ALADP13716 330 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FPR3P25089 353 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 IGHMBP2P38935 993 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 MAPK9P45984 424 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 AARSP49588 968 aaKnown RBP eCLIP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CDK7P50613 346 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 COPB1P53618 953 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PRKAA2P54646 552 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CCDC15Q0P6D6 951 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SF3A3Q12874 501 aaKnown RBP eCLIP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CUL4BQ13620 913 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM187BQ17R55 369 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RNASE12Q5GAN4 147 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 TTC22Q5TAA0 569 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ANKRD40Q6AI12 368 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SUMO4Q6EEV6 95 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SLC18B1Q6NT16 456 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CEP85Q6P2H3 762 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RINLQ6ZS11 566 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 TOM1L2Q6ZVM7 507 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RRAGAQ7L523 313 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 NEK8Q86SG6 692 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 C12orf76Q8N812 135 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF366Q8N895 744 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 OR6Y1Q8NGX8 325 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SPPL3Q8TCT6 385 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CSGALNACT1Q8TDX6 532 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 THAP4Q8WY91 577 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CPT1BQ92523 772 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZBTB9Q96C00 473 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SDCCAG3Q96C92 435 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 REXO5Q96IC2 774 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAR2Q96K12 515 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF48Q96MX3 618 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 MECRQ9BV79 373 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CIPCQ9C0C6 399 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SPRTNQ9H040 489 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 KCNK9Q9NPC2 374 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PDGFCQ9NRA1 345 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 VPS45Q9NRW7 570 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 LIN7CQ9NUP9 197 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 NDUFAF4Q9P032 175 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 VPS4AQ9UN37 437 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 GTF2A1LQ9UNN4 478 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZBTB1Q9Y2K1 713 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 UBE2J1Q9Y385 318 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RGPD3A6NKT7 1758 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RGPD4Q7Z3J3 1758 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 NUP155O75694 1391 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 CCDC88AQ3V6T2 1871 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 PARD3Q8TEW0 1356 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 SSH2Q76I76 1423 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 ARHGEF28Q8N1W1 1705 aaKnown RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 DOT1LQ8TEK3 1739 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 KCPQ6ZWJ8 1503 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 LOC105369274A0A096LPK9 316 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 LOC102723532A0A0G2JNH3 316 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 B9A039 149 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 E7EVH7 732 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 EIF3FO00303 357 aaPredicted RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 NKX2-8O15522 239 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 EXOC3O60645 756 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 PRAMEF2O60811 474 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 KRT38O76015 456 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 TOP3BO95985 862 aaKnown RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 APEHP13798 732 aaKnown RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 GALNSP34059 522 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 THBS4P35443 961 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 JAK3P52333 1124 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 ACTR2P61160 394 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 TUBA4AP68366 448 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 GPC5P78333 572 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 CFHR3Q02985 330 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 SLC10A2Q12908 348 aaPredicted RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 CBFBQ13951 182 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 TAF12Q16514 161 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 AAK1Q2M2I8 961 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 TBRG1Q3YBR2 411 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 GALNTL6Q49A17 601 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 FBXO47Q5MNV8 452 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 TMEM63BQ5T3F8 832 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 ACSM6Q6P461 480 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 CYP26C1Q6V0L0 522 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 BCDIN3DQ7Z5W3 292 aaKnown RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 C2CD5Q86YS7 1000 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 C16orf71Q8IYS4 520 aaPredicted RBP1.71□□□□□ -2.14
PRPF39-208ENST00000554785 OR4N4Q8N0Y3 316 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 TERB1Q8NA31 727 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 OR52L2PQ8NGH6 319 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 AFG1LQ8WV93 481 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 NPIPB3Q92617 1050 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 GOLGA1Q92805 767 aa1.71□□□□□ -2.14
PRPF39-208ENST00000554785 RILPL2Q969X0 211 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms