RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RTN2O75298 545 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF217O75362 1048 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 LRIG2O94898 1065 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SERPING1P05155 500 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SRPRAP08240 638 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF806P0C7X5 589 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 GZMAP12544 262 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 MAOBP27338 520 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 CD6P30203 668 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 OR1E1P30953 314 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ACSL1P33121 698 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ACVRL1P37023 503 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 MTA1Q13330 715 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SLC12A1Q13621 1099 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 RWDD4Q6NW29 188 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 TMC6Q7Z403 805 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 MMAAQ8IVH4 418 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SYN2Q92777 582 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF653Q96CK0 615 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 VCPIP1Q96JH7 1222 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 HSPA12BQ96MM6 686 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 PEBP4Q96S96 227 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SPON2Q9BUD6 331 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ISCUQ9H1K1 167 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 OSBPL2Q9H1P3 480 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 RSPH9Q9H1X1 276 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 PARVAQ9NVD7 372 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 WSB2Q9NYS7 404 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ARHGAP20Q9P2F6 1191 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SUN2Q9UH99 717 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 PCSK1NQ9UHG2 260 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 VPS51Q9UID3 782 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 PCDHGA5Q9Y5G8 931 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 CEP192Q8TEP8 1941 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 DCHS1Q96JQ0 3298 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 ITIH6Q6UXX5 1313 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ANKRD62A6NC57 917 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 RNF103O00237 685 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 MID1O15344 667 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 BNIP3LO60238 219 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 LRP3O75074 770 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 TCF4P15884 667 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 PSMA2P25787 234 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 EIF4A3P38919 411 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 IRX4P78413 519 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF33AQ06730 810 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 BYSLQ13895 437 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 DLG2Q15700 870 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 CA9Q16790 459 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ARL13BQ3SXY8 428 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 POM121L1PQ3SYA9 428 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ACCSLQ4AC99 568 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 LYSMD4Q5XG99 296 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF776Q68DI1 518 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 SLC36A4Q6YBV0 504 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 LEKR1Q6ZMV7 388 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 Q6ZVU0 165 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 SLFN11Q7Z7L1 901 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 METTL3Q86U44 580 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 C11orf74Q86VG3 221 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 NLRP14Q86W24 1093 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 GAS2L3Q86XJ1 694 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 VSTM4Q8IW00 320 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ARHGEF26Q96DR7 871 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 BTBD6Q96KE9 485 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 ZYG11BQ9C0D3 744 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 THAP2Q9H0W7 228 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 RBSNQ9H1K0 784 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 VPS45Q9NRW7 570 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 DNAI1Q9UI46 699 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 FZD10Q9ULW2 581 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 SLCO1B1Q9Y6L6 691 aa11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 TNRC6BQ9UPQ9 1833 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-208ENST00000554165 EDDM13A0A1B0GTR0 161 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 CBX4O00257 560 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NDUFS2O75306 463 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 ZMPSTE24O75844 475 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 IGLV3-19P01714 112 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 ACADMP11310 421 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 SRCP12931 536 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 RHOQP17081 205 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 ID4P47928 161 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 PSMD8P48556 350 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 ADKP55263 362 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 OXCT1P55809 520 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NRG1Q02297 640 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 GNA12Q03113 381 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 LMNB2Q03252 620 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 SCAPQ12770 1279 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 ARID5BQ14865 1188 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 E2F5Q15329 346 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 CST6Q15828 149 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 AASDHQ4L235 1098 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 SPECC1LQ69YQ0 1117 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 CYP4V2Q6ZWL3 525 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 SETD3Q86TU7 594 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 CPNE8Q86YQ8 564 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 SH2D3CQ8N5H7 860 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 AADATQ8N5Z0 425 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 GPR161Q8N6U8 529 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms