RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DUSP4Q13115 394 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 GPR17Q13304 367 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TRPC3Q13507 836 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 NCOA4Q13772 614 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PTK6Q13882 451 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SLC1A5Q15758 541 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SGO2Q562F6 1265 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PPM1LQ5SGD2 360 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SPOPLQ6IQ16 392 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 RIPOR1Q6ZS17 1223 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 GRASPQ7Z6J2 395 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PRUNE1Q86TP1 453 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 LRRC6Q86X45 466 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PDSS2Q86YH6 399 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C4orf33Q8N1A6 199 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 CMASQ8NFW8 434 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 OR6Y1Q8NGX8 325 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 RFWD2Q8NHY2 731 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 KBTBD7Q8WVZ9 684 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C9orf72Q96LT7 481 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 RIPOR3Q96MK2 946 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 KREMEN1Q96MU8 473 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 CYTH2Q99418 400 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TTC1Q99614 292 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SYT11Q9BT88 431 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TMLHEQ9NVH6 421 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TAS2R14Q9NYV8 317 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 AFF4Q9UHB7 1163 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 DPP7Q9UHL4 492 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 MTO1Q9Y2Z2 717 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 NME7Q9Y5B8 376 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C2CD4DB7Z1M9 353 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PRRG1O14668 218 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 NDC80O14777 642 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 HUS1O60921 280 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PAPLNO95428 1278 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 CDK4P11802 303 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 UQCRBP14927 111 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 RFX1P22670 979 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 ADCY8P40145 1251 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 MTHFRP42898 656 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 PSMD7P51665 324 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 ACTR3P61158 418 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 CDK16Q00536 496 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 OVGP1Q12889 678 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 MESDQ14696 234 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TCEAL1Q15170 157 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SLC39A12Q504Y0 691 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 HSP90AA5PQ58FG0 334 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TPGS2Q68CL5 300 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C1orf228Q6PIY5 440 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 LVRNQ6Q4G3 990 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 POTEHQ6S545 545 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 RBM44Q6ZP01 1051 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 LIMS2Q7Z4I7 341 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TCEAL8Q8IYN2 117 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 GRK7Q8WTQ7 553 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C17orf50Q8WW18 174 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C1orf54Q8WWF1 131 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SKA1Q96BD8 255 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 CFAP57Q96MR6 1250 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 NECTIN4Q96NY8 510 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SIKE1Q9BRV8 207 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 GPAMQ9HCL2 828 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 WDR6Q9NNW5 1121 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 DDX18Q9NVP1 670 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TBCCD1Q9NVR7 557 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 DNMT3BQ9UBC3 853 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 NXF1Q9UBU9 619 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 DENND4AQ7Z401 1863 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 MTMR11A4FU01 709 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 CCDC160A6NGH7 325 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 OR6C75A6NL08 312 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 GABRDO14764 452 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 VILLO15195 856 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 BUD23O43709 281 aaKnown RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 SPOPO43791 374 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 FKBP6O75344 327 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 USP1O94782 785 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 PDGFRBP09619 1106 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 PAX3P23760 479 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 IVDP26440 423 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 RPL5P46777 297 aaKnown RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 VPS41P49754 854 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 SERPINB8P50452 374 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 CHN2P52757 468 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 CDH8P55286 799 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 TRIP13Q15645 432 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 SEPT7Q16181 437 aaKnown RBP7.85□□□□□ -1.15
LIMA1-216ENST00000552909 TMCO4Q5TGY1 634 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 RAPH1Q70E73 1250 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 METTL23Q86XA0 190 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 TDRPQ86YL5 185 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 TMPRSS6Q8IU80 811 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 RNF135Q8IUD6 432 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 RELL1Q8IUW5 271 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 ADGRF2Q8IZF7 708 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 BBOF1Q8ND07 529 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 CEP70Q8NHQ1 597 aa7.85□□□□□ -1.15
LIMA1-216ENST00000552909 GAB3Q8WWW8 586 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms