RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MAGEA11P43364 429 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 PREPP48147 710 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 RAD23BP54727 409 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 POLR2FP61218 127 aaKnown RBP5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SLC7A5Q01650 507 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 NR1I3Q14994 352 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 VEPH1Q14D04 833 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 CCDC142Q17RM4 750 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 LEXMQ3ZCV2 418 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 CFAP221Q4G0U5 840 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SGO2Q562F6 1265 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 WIPI1Q5MNZ9 446 aaPredicted RBP5.35□□□□□ -1.55
CLIP1-217ENST00000543205 IQCEQ6IPM2 695 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SYCE2Q6PIF2 218 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 Q6ZS46 218 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 ITIH5Q86UX2 942 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 TTC30AQ86WT1 665 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 PTRH1Q86Y79 214 aaKnown RBP5.35□□□□□ -1.55
CLIP1-217ENST00000543205 TTC9BQ8N6N2 239 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 C12orf29Q8N999 325 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SLC4A11Q8NBS3 891 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 CMASQ8NFW8 434 aaPredicted RBP5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SLC2A14Q8TDB8 520 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SMG7Q92540 1137 aaKnown RBP5.35□□□□□ -1.55
CLIP1-217ENST00000543205 CYFIP2Q96F07 1278 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SMARCD1Q96GM5 515 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 MEGF10Q96KG7 1140 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 MSLNLQ96KJ4 702 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 KREMEN1Q96MU8 473 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SPAG5Q96R06 1193 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 CHCHD6Q9BRQ6 235 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 C1QTNF1Q9BXJ1 281 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 B3GNT5Q9BYG0 378 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 STK33Q9BYT3 514 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 S1PR5Q9H228 398 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 VPS11Q9H270 941 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SPTLC3Q9NUV7 552 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 IFNKQ9P0W0 207 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 CHD7Q9P2D1 2997 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 THEGQ9P2T0 379 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 KIAA1257Q9ULG3 409 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SIK3Q9Y2K2 1263 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 YIPF1Q9Y548 306 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 SNX5Q9Y5X3 404 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 FHOD1Q9Y613 1164 aa5.35□□□□□ -1.55
CLIP1-217ENST00000543205 MYO7AQ13402 2215 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 A0A1W2PQC6 194 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 FOXN3O00409 490 aaPredicted RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 MED7O43513 233 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 TIAF1O95411 115 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 POU2F2P09086 479 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 PTPN2P17706 415 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 MTHFRP42898 656 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 GATA4P43694 442 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 SLC8A3P57103 927 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 BPIFB3P59826 476 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 MRPS5P82675 430 aaKnown RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 RPL6Q02878 288 aaKnown RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 TFF2Q03403 129 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 SMAD4Q13485 552 aaKnown RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 SEMA5AQ13591 1074 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 DRAP1Q14919 205 aaPredicted RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 LCE1DQ5T752 114 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 DPY19L2P1Q6NXN4 242 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 ZNF449Q6P9G9 518 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 LRFN4Q6PJG9 635 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 VSTM1Q6UX27 236 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 CACNA2D4Q7Z3S7 1137 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 GPR149Q86SP6 731 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 ZNF227Q86WZ6 799 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 GAS2L3Q86XJ1 694 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 TAB3Q8N5C8 712 aaPredicted RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 SMRP1Q8NCR6 262 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 SHC3Q92529 594 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 PLPPR2Q96GM1 343 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 RSRC1Q96IZ7 334 aaKnown RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 NECTIN4Q96NY8 510 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 UHRF1Q96T88 793 aaPredicted RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 HNRNPABQ99729 332 aaKnown RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 ZNF518BQ9C0D4 1074 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 RNF38Q9H0F5 515 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 GANQ9H2C0 597 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 MKS1Q9NXB0 559 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 HESX1Q9UBX0 185 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 AJAP1Q9UKB5 411 aaPredicted RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 CNTN6Q9UQ52 1028 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 USP15Q9Y4E8 981 aaPredicted RBP5.34□□□□□ -1.55
CLIP1-217ENST00000543205 ASB3Q9Y575 518 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 ITIH6Q6UXX5 1313 aa5.34□□□□□ -1.55
CLIP1-217ENST00000543205 TSC2P49815 1807 aa5.34□□□□□ -1.56
CLIP1-217ENST00000543205 ATG2AQ2TAZ0 1938 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 F8VP50 259 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 F8VZ95 297 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 CYP26A1O43174 497 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 THAP12O43422 761 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 MBTPS2O43462 519 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 AHCYL1O43865 530 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 NOL4O94818 638 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 CSH1P0DML2 217 aa5.33□□□□□ -1.56
CLIP1-217ENST00000543205 CSH2P0DML3 217 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms