RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MGRN1O60291 552 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 MT-CYBP00156 380 aaPredicted RBP16.67■□□□□ 0.26
COL4A1-204ENST00000543140 HOXD10P28358 340 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 CYP2C18P33260 490 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 ARFIP2P53365 341 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 PPP2R5DQ14738 602 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 ANKRD20A4Q4UJ75 823 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 HSP90AA5PQ58FG0 334 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 FAM171A1Q5VUB5 890 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 LHX8Q68G74 356 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 DCP1BQ8IZD4 617 aaKnown RBP16.67■□□□□ 0.26
COL4A1-204ENST00000543140 TMEM120AQ9BXJ8 343 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 CD248Q9HCU0 757 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 ARHGEF3Q9NR81 526 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 MKS1Q9NXB0 559 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 ERI2A8K979 691 aaKnown RBP16.66■□□□□ 0.26
COL4A1-204ENST00000543140 INHAP05111 366 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 DLDP09622 509 aaKnown RBP16.66■□□□□ 0.26
COL4A1-204ENST00000543140 MNAT1P51948 309 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 COG7P83436 770 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 SNCBQ16143 134 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 CTXN3Q4LDR2 81 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 N4BP2L1Q5TBK1 243 aaPredicted RBP16.66■□□□□ 0.26
COL4A1-204ENST00000543140 TMEM135Q86UB9 458 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 NUP93Q8N1F7 819 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 TET1Q8NFU7 2136 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 TBC1D31Q96DN5 1066 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 FBXO6Q9NRD1 293 aaPredicted RBP16.66■□□□□ 0.26
COL4A1-204ENST00000543140 TXLNGQ9NUQ3 528 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 MARCOQ9UEW3 520 aaPredicted RBP16.66■□□□□ 0.26
COL4A1-204ENST00000543140 BAIAP2L1Q9UHR4 511 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 HS3ST4Q9Y661 456 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 ZCWPW2A0A1B0GU75 182 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 T-ENOLP0DO92 83 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 KITP10721 976 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 PRPSAP1Q14558 356 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 STRA8Q7Z7C7 330 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 CMC1Q7Z7K0 106 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF778Q96MU6 729 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 C20orf27Q9GZN8 174 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 GMIPQ9P107 970 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 SIRPGQ9P1W8 387 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 SLC27A5Q9Y2P5 690 aa16.66■□□□□ 0.26
COL4A1-204ENST00000543140 NYNRINQ9P2P1 1898 aaKnown RBP16.66■□□□□ 0.26
COL4A1-204ENST00000543140 A8MUI8 341 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 E9PAM4 449 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 KLF11O14901 512 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 MAFKO60675 156 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 TBX18O95935 607 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 BPGMP07738 259 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 TYK2P29597 1187 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 GP5P40197 560 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 PBX3P40426 434 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 ARTNQ5T4W7 220 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 LRRC8DQ7L1W4 858 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 KDELC2Q7Z4H8 507 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 CLNKQ7Z7G1 428 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 ABI1Q8IZP0 508 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF398Q8TD17 642 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 PRR11Q96HE9 360 aaPredicted RBP16.65■□□□□ 0.26
COL4A1-204ENST00000543140 GPR62Q9BZJ7 368 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 CATSPERBQ9H7T0 1116 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 EMCNQ9ULC0 261 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 KCNU1A8MYU2 1149 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF189O75820 626 aaPredicted RBP16.65■□□□□ 0.26
COL4A1-204ENST00000543140 USP1O94782 785 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 MYCP01106 439 aaPredicted RBP16.65■□□□□ 0.26
COL4A1-204ENST00000543140 MYL2P10916 166 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 CCNCP24863 283 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 NMBRP28336 390 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 SERPINB3P29508 390 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 ZBTB16Q05516 673 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 MANEALQ5VSG8 457 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 MON1AQ86VX9 555 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 DBF4BQ8NFT6 615 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 IPMKQ8NFU5 416 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 C20orf96Q9NUD7 363 aaPredicted RBP16.65■□□□□ 0.26
COL4A1-204ENST00000543140 SCML2Q9UQR0 700 aa16.65■□□□□ 0.26
COL4A1-204ENST00000543140 NBNO60934 754 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ATP6V1G2O95670 118 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 KCNA4P22459 653 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 RPL10AP62906 217 aaKnown RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 EFEMP1Q12805 493 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 NAB1Q13506 487 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 NFE2Q16621 373 aaPredicted RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 DEFB115Q30KQ5 88 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 FASTKD1Q53R41 847 aaKnown RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 PIK3R6Q5UE93 754 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ATG16L1Q676U5 607 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TFAP2DQ7Z6R9 452 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ARID3BQ8IVW6 561 aaPredicted RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 CPNE1Q99829 537 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 CREBZFQ9NS37 354 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 ZNF358Q9NW07 568 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 PCDHB5Q9Y5E4 795 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 NT5C1B-RDH14C9J2C7 533 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TMEM189-UBE2V1I3L0A0 370 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 FGF10O15520 208 aaPredicted RBP16.64■□□□□ 0.25
COL4A1-204ENST00000543140 TGDSO95455 350 aa16.64■□□□□ 0.25
COL4A1-204ENST00000543140 SKIV2L2P42285 1042 aaKnown RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 160.4 ms