RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NUP58Q9BVL2 599 aa14.59□□□□□ -0.07
USP28-209ENST00000540925 SELENOOQ9BVL4 669 aa14.59□□□□□ -0.07
USP28-209ENST00000540925 SEPT11Q9NVA2 429 aaKnown RBP14.59□□□□□ -0.07
USP28-209ENST00000540925 MPP6Q9NZW5 540 aa14.59□□□□□ -0.07
USP28-209ENST00000540925 CHD5Q8TDI0 1954 aa14.59□□□□□ -0.07
USP28-209ENST00000540925 PCDH15Q96QU1 1955 aa14.59□□□□□ -0.07
USP28-209ENST00000540925 FAM72CH0Y354 149 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 CCP110O43303 1012 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 TNFAIP3P21580 790 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 MAMLD1Q13495 774 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 FAM72AQ5TYM5 149 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 RNF219Q5W0B1 726 aaPredicted RBP14.58□□□□□ -0.08
USP28-209ENST00000540925 ZNF776Q68DI1 518 aaPredicted RBP14.58□□□□□ -0.08
USP28-209ENST00000540925 FAM72DQ6L9T8 149 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 SLC23A3Q6PIS1 610 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 LRRC31Q6UY01 552 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 NLRP14Q86W24 1093 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 FAM72BQ86X60 149 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 DEFB119Q8N690 84 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 C12orf50Q8NA57 414 aaPredicted RBP14.58□□□□□ -0.08
USP28-209ENST00000540925 C1orf216Q8TAB5 229 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 FAM131CQ96AQ9 280 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 HSPA12BQ96MM6 686 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 MCEEQ96PE7 176 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 PPP1R9BQ96SB3 815 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 CNPY3Q9BT09 278 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 MAGEB5Q9BZ81 275 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 PCED1AQ9H1Q7 454 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 RETREG1Q9H6L5 497 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 CAPN10Q9HC96 672 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 IFNKQ9P0W0 207 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 OR12D3Q9UGF7 316 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 CDV3Q9UKY7 258 aaKnown RBP14.58□□□□□ -0.08
USP28-209ENST00000540925 CAPN11Q9UMQ6 739 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 HS3ST2Q9Y278 367 aa14.58□□□□□ -0.08
USP28-209ENST00000540925 NUMA1Q14980 2115 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 A0A0D9SEW6 157 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 ILVBLA1L0T0 632 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 GOLGA6L19H0YKK7 550 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 GYPCP04921 128 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 SKILP12757 684 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 VAV1P15498 845 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 NUMBP49757 651 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 IRX4P78413 519 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 ZBED6P86452 979 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 KLHL30Q0D2K2 578 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 ZNF252P-AS1Q0IIN9 211 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 SEMA3BQ13214 749 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 AASDHQ4L235 1098 aaPredicted RBP14.57□□□□□ -0.08
USP28-209ENST00000540925 ZNF783Q6ZMS7 281 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 USP30Q70CQ3 517 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 TFAP2DQ7Z6R9 452 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 CACUL1Q86Y37 369 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 DNAAF5Q86Y56 855 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 SH2D3CQ8N5H7 860 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 FOXJ1Q92949 421 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 IQCDQ96DY2 449 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 GPR174Q9BXC1 333 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 ZYG11BQ9C0D3 744 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 ISCUQ9H1K1 167 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 PABPC3Q9H361 631 aaKnown RBP14.57□□□□□ -0.08
USP28-209ENST00000540925 SERGEFQ9UGK8 458 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 VPS51Q9UID3 782 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 VPS28Q9UK41 221 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 SCML1Q9UN30 329 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 CFAP47Q6ZTR5 3102 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 ATXN2Q99700 1313 aaKnown RBP14.57□□□□□ -0.08
USP28-209ENST00000540925 PI4KAP42356 2102 aa14.57□□□□□ -0.08
USP28-209ENST00000540925 TMEM191CA6NGB0 347 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 METTL12A8MUP2 240 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 CDX4O14627 284 aaPredicted RBP14.56□□□□□ -0.08
USP28-209ENST00000540925 KHNYNO15037 678 aaKnown RBP14.56□□□□□ -0.08
USP28-209ENST00000540925 SRGAP2O75044 1071 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 NDUFS2O75306 463 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 ZMPSTE24O75844 475 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 KRT37O76014 449 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 LRIG2O94898 1065 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 MT-CO1P00395 513 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 RHOCP08134 193 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 ACADMP11310 421 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 ACSL1P33121 698 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 CST6Q15828 149 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 ARL13BQ3SXY8 428 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 TRIM61Q5EBN2 209 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 C6orf118Q5T5N4 469 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 STPG1Q5TH74 334 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 LRSAM1Q6UWE0 723 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 STK40Q8N2I9 435 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 ARFGAP1Q8N6T3 406 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 DCAF4L2Q8NA75 395 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 EDEM2Q9BV94 578 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 C2orf49Q9BVC5 232 aaPredicted RBP14.56□□□□□ -0.08
USP28-209ENST00000540925 XPO4Q9C0E2 1151 aaKnown RBP14.56□□□□□ -0.08
USP28-209ENST00000540925 MUC3BQ9H195 1237 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 NDFIP2Q9NV92 336 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 PARVAQ9NVD7 372 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 ADAMTS1Q9UHI8 967 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 CACNA1EQ15878 2313 aa14.56□□□□□ -0.08
USP28-209ENST00000540925 CXorf51AA0A1B0GTR3 108 aa14.55□□□□□ -0.08
USP28-209ENST00000540925 TMCO5BA8MYB1 307 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms