RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 TMEM25Q86YD3 366 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 ARFGAP1Q8N6T3 406 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 KCTD6Q8NC69 237 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 HSPH1Q92598 858 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 TBC1D31Q96DN5 1066 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 PRMT1Q99873 361 aaKnown RBP20.73■□□□□ 0.91
USP53-208ENST00000514305 SNRNP25Q9BV90 132 aaKnown RBP20.73■□□□□ 0.91
USP53-208ENST00000514305 TPSD1Q9BZJ3 242 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 ARHGEF4Q9NR80 690 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 VPS45Q9NRW7 570 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 THADAQ6YHU6 1953 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 NUP205Q92621 2012 aa20.73■□□□□ 0.91
USP53-208ENST00000514305 NCOR2Q9Y618 2525 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 A0A1B0GVM2 712 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 CCDC66A2RUB6 948 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 TCAF2A6NFQ2 919 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 MIF4GDA9UHW6 222 aaKnown RBP20.72■□□□□ 0.91
USP53-208ENST00000514305 H3BRJ5 948 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 TBL1XO60907 577 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 ALDH1A2O94788 518 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 MOCS3O95396 460 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 TYRP14679 529 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 SLC6A11P48066 632 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 LIMK1P53667 647 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 CDH4P55283 916 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 SLC25A11Q02978 314 aaKnown RBP20.72■□□□□ 0.91
USP53-208ENST00000514305 KDSRQ06136 332 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 C5orf22Q49AR2 442 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 HSF5Q4G112 596 aaPredicted RBP20.72■□□□□ 0.91
USP53-208ENST00000514305 ANO7Q6IWH7 933 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 RFWD3Q6PCD5 774 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 CHST9Q7L1S5 443 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 CCDC33Q8N5R6 958 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 UBL4BQ8N7F7 174 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 ZYG11BQ9C0D3 744 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 RCOR3Q9P2K3 495 aaPredicted RBP20.72■□□□□ 0.91
USP53-208ENST00000514305 DEC1Q9P2X7 70 aa20.72■□□□□ 0.91
USP53-208ENST00000514305 XPO7Q9UIA9 1087 aaKnown RBP20.72■□□□□ 0.91
USP53-208ENST00000514305 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.72■□□□□ 0.91
USP53-208ENST00000514305 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.71■□□□□ 0.91
USP53-208ENST00000514305 DRGXA6NNA5 263 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 H0Y626 953 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 DCLK1O15075 740 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 FGF10O15520 208 aaPredicted RBP20.71■□□□□ 0.91
USP53-208ENST00000514305 CREB3O43889 395 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 KIF5CO60282 957 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 PALMO75781 387 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 PENKP01210 267 aaPredicted RBP20.71■□□□□ 0.91
USP53-208ENST00000514305 RARAP10276 462 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 SLC6A4P31645 630 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 GRIA2P42262 883 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 HCAR3P49019 387 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 TPI1P60174 286 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 CREB5Q02930 508 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 ZNF177Q13360 481 aaPredicted RBP20.71■□□□□ 0.91
USP53-208ENST00000514305 CRY1Q16526 586 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 DPYSL2Q16555 572 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 RAB6CQ53S08 254 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 PLA2G2CQ5R387 149 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 RWDD4Q6NW29 188 aaKnown RBP20.71■□□□□ 0.91
USP53-208ENST00000514305 RASSF3Q86WH2 238 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 C12orf40Q86WS4 652 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 RAB6CQ9H0N0 254 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 PRDM16Q9HAZ2 1276 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.71■□□□□ 0.91
USP53-208ENST00000514305 SALL4Q9UJQ4 1053 aa20.71■□□□□ 0.91
USP53-208ENST00000514305 SPTBN2O15020 2390 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 IGLV3-10A0A075B6K4 115 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 EEF2KO00418 725 aaKnown RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 CACNG3O60359 315 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 KLF8O95600 359 aaPredicted RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 EPHB2P29323 1055 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 GJC1P36383 396 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 TNFRSF4P43489 277 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 CDH6P55285 790 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 SLC12A1Q13621 1099 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 CDH18Q13634 790 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 SMTNL2Q2TAL5 461 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 PPP6R3Q5H9R7 873 aaPredicted RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 EOGTQ5NDL2 527 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 FYB2Q5VWT5 728 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 VSIG1Q86XK7 387 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 MFN1Q8IWA4 741 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 ALLCQ8N6M5 410 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 TXNDC5Q8NBS9 432 aaKnown RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 MAK16Q9BXY0 300 aaKnown RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 POLMQ9NP87 494 aaPredicted RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 KIAA1522Q9P206 1035 aaPredicted RBP20.7■□□□□ 0.9
USP53-208ENST00000514305 TRIM10Q9UDY6 481 aa20.7■□□□□ 0.9
USP53-208ENST00000514305 GRID2IPA4D2P6 1211 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 GFRA2O00451 464 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 LRIG2O94898 1065 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 LUC7L3O95232 432 aaKnown RBP20.69■□□□□ 0.9
USP53-208ENST00000514305 ADRB1P08588 477 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 TNNT1P13805 278 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 RHOQP17081 205 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 IL1R2P27930 398 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 KCNT1Q5JUK3 1230 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 C6orf118Q5T5N4 469 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 GRAMD4Q6IC98 578 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms