RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 HGSNATQ68CP4 663 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 CRTC3Q6UUV7 619 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 ZCCHC7Q8N3Z6 543 aaKnown RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 CMTM5Q96DZ9 223 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 SH3GL1Q99961 368 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 C11orf84Q9BUA3 381 aaPredicted RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 CEP72Q9P209 647 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 RGS17Q9UGC6 210 aaPredicted RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 METP08581 1390 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 FAM234BA2RU67 622 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 OTOL1A6NHN0 477 aaPredicted RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 FPGTO14772 594 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 ATP9AO75110 1047 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 SYNGR4O95473 234 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 TCN1P20061 433 aaPredicted RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 SRP54P61011 504 aaKnown RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 LGALS3BPQ08380 585 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 RBL2Q08999 1139 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 ZNF155Q12901 538 aaPredicted RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 MAD2L1Q13257 205 aaPredicted RBP9.08□□□□□ -0.96
VCAN-208ENST00000512590 PAOXQ6QHF9 649 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 IKBIPQ70UQ0 350 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 OR2AJ1Q8NGZ0 328 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 TRIM63Q969Q1 353 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 CDCA5Q96FF9 252 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 SERPINB11Q96P15 392 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 SH2D3AQ9BRG2 576 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 SMURF1Q9HCE7 757 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 ERVW-1Q9UQF0 538 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 PITPNM2Q9BZ72 1349 aa9.08□□□□□ -0.96
VCAN-208ENST00000512590 PLEKHA8P1O95397 391 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 LTFP02788 710 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 SYPP08247 313 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 TRIM49P0CI25 452 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 TRIM49CP0CI26 452 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CSH1P0DML2 217 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CSH2P0DML3 217 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 FDFT1P37268 417 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 COPAP53621 1224 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CDH15P55291 814 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 MPP3Q13368 585 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ARMCX4Q5H9R4 360 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 FAM91A1Q658Y4 838 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ZNF57Q68EA5 555 aaPredicted RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 SLFN11Q7Z7L1 901 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 FAM228AQ86W67 206 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 GALNT13Q8IUC8 556 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 UNKQ9C0B0 810 aaKnown RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 ROGDIQ9GZN7 287 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 SPTLC3Q9NUV7 552 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ADAMTS1Q9UHI8 967 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 NCAPD2Q15021 1401 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 PNMA6EA0A0J9YXQ4 647 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 UBXN7O94888 489 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 EYA4O95677 639 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 USP6P35125 1406 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 HNF1BP35680 557 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 MLH1P40692 756 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 HSF2Q03933 536 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 DENND1BQ6P3S1 775 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 C4orf22Q6V702 233 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ATG16L2Q8NAA4 619 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ECHDC3Q96DC8 303 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ZDHHC15Q96MV8 337 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 UROC1Q96N76 676 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 PPP1R10Q96QC0 940 aaKnown RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 NIF3L1Q9GZT8 377 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 TNKS2Q9H2K2 1166 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ZFP14Q9HCL3 533 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ATAD3AQ9NVI7 634 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 DYTNA2CJ06 578 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 AIM2O14862 343 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 IL1AP01583 271 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 IL6P05231 212 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ADSLP30566 484 aaPredicted RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 CSHL1Q14406 222 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CRYMQ14894 314 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 PSMD5Q16401 504 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CRY1Q16526 586 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 MARC1Q5VT66 337 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 OGFOD2Q6N063 350 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 KIAA0408Q6ZU52 694 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 GPC2Q8N158 579 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 C1orf54Q8WWF1 131 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 RAD51AP1Q96B01 352 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 MCRS1Q96EZ8 462 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 PHF24Q9UPV7 400 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ABCC10Q5T3U5 1492 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 HEG1Q9ULI3 1381 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 RTCAO00442 366 aaKnown RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 SEC31AO94979 1220 aaKnown RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 IGHDP01880 384 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ATF4P18848 351 aaPredicted RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 IDSP22304 550 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 ALDH4A1P30038 563 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 SLC7A1P30825 629 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 TKTL1P51854 596 aa9.07□□□□□ -0.96
VCAN-208ENST00000512590 CYLC2Q14093 348 aaPredicted RBP9.07□□□□□ -0.96
VCAN-208ENST00000512590 FGL2Q14314 439 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms