RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ASNSD1Q9NWL6 643 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 RRN3Q9NYV6 651 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 VPS28Q9UK41 221 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 CNTN6Q9UQ52 1028 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 E5RJQ4 531 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 PLRG1O43660 514 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 FYNP06241 537 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 ALPPL2P10696 532 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 ACTN2P35609 894 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 USP8P40818 1118 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 CTSOP43234 321 aaPredicted RBP21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 PAK1Q13153 545 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 KCNT1Q5JUK3 1230 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 HES3Q5TGS1 186 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 SYPL2Q5VXT5 272 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 TRIM59Q8IWR1 403 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 APCDD1Q8J025 514 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 CACTIN-AS1Q8N1I8 211 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 ZNF606Q8WXB4 792 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 C2orf49Q9BVC5 232 aaPredicted RBP21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 CYTH4Q9UIA0 394 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 SPEGQ15772 3267 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 BAHCC1Q9P281 2608 aa21.65■■□□□ 1.06
SQSTM1-210ENST00000506042 A0A1W2PR77 199 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 TK2O00142 265 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 CLDN11O75508 207 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 GABBR2O75899 941 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 RECQLP46063 649 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 ACADVLP49748 655 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 MARSP56192 900 aaKnown RBP21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 DAB2P98082 770 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 KCNJ12Q14500 433 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 TTI2Q6NXR4 508 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 NEK5Q6P3R8 708 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 ARHGEF19Q8IW93 802 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 LMO3Q8TAP4 145 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 KAT5Q92993 513 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 KLHDC7BQ96G42 594 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 PPP1R16AQ96I34 528 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 ZSWIM1Q9BR11 485 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 MUC3BQ9H195 1237 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 CTNND2Q9UQB3 1225 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 CABIN1Q9Y6J0 2220 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 ASPMQ8IZT6 3477 aa21.64■■□□□ 1.05
SQSTM1-210ENST00000506042 ACACAQ13085 2346 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 DMXL2Q8TDJ6 3036 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 SYNJ2BP-COX16A0A087WUM0 186 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 WNT1P04628 370 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 STK19P49842 368 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 SEMG2Q02383 582 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 PTK2Q05397 1052 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 PDCLQ13371 301 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 PRAMEF14Q5SWL7 426 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 ISM2Q6H9L7 571 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 DENND1BQ6P3S1 775 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 LRRC31Q6UY01 552 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 SRRTQ9BXP5 876 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 COX16Q9P0S2 106 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 MAN1B1Q9UKM7 699 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 STAP1Q9ULZ2 295 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 CLCA2Q9UQC9 943 aa21.63■■□□□ 1.05
SQSTM1-210ENST00000506042 CAPN8A6NHC0 703 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 RIOK3O14730 519 aaKnown RBP21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 MCF2LO15068 1137 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 ATP9BO43861 1147 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 IGLV3-25P01717 112 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 PRNPP04156 253 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 PRKCSHP14314 528 aaPredicted RBP21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 AKT2P31751 481 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 KRT9P35527 623 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 C19orf57Q0VDD7 668 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 TARDBPQ13148 414 aaKnown RBP eCLIP21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 DNAJC3Q13217 504 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 RTP5Q14D33 572 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 C11orf57Q6ZUT1 292 aaPredicted RBP21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 ZDHHC17Q8IUH5 632 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 PIP4K2CQ8TBX8 421 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 PPP1R13BQ96KQ4 1090 aa21.62■■□□□ 1.05
SQSTM1-210ENST00000506042 NEMP2A6NFY4 417 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 BNIP3LO60238 219 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 GLDCP23378 1020 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 MAT2AP31153 395 aaKnown RBP21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 DRD3P35462 400 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 DUSP3P51452 185 aaPredicted RBP21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 CDH4P55283 916 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 DLG2Q15700 870 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 SFMBT2Q5VUG0 894 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 GBP6Q6ZN66 633 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 ZSCAN30Q86W11 494 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 CREBRFQ8IUR6 639 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 MSANTD4Q8NCY6 345 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 LSM14AQ8ND56 463 aaKnown RBP21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 TSC1Q92574 1164 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 KREMEN1Q96MU8 473 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 FEM1AQ9BSK4 669 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 PDCL3Q9H2J4 239 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 EBF2Q9HAK2 575 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 XPO7Q9UIA9 1087 aaKnown RBP21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 ZFYVE26Q68DK2 2539 aa21.61■■□□□ 1.05
SQSTM1-210ENST00000506042 RTN2O75298 545 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms