RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CAMKK1Q8N5S9 505 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 ZFRQ96KR1 1074 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CDT1Q9H211 546 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 C1QTNF3-AMACRE9PGA6 284 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 AP5Z1O43299 807 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 TPD52L2O43399 206 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 SP100P23497 879 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 DMPKQ09013 629 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 DGKZQ13574 1117 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CAPSQ13938 189 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 MAGEC3Q8TD91 643 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 ACO2Q99798 780 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 ZSCAN32Q9NX65 697 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 RAB23Q9ULC3 237 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 SALL3Q9BXA9 1300 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 SPATA31C2B4DYI2 1134 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 BTN3A1O00481 513 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 MEIS2O14770 477 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 RPL9P32969 192 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 SERPINH1P50454 418 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CCDC153Q494R4 210 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 OR56A4Q8NGH8 313 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 NKX2-3Q8TAU0 364 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 UBAP1Q9NZ09 502 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CAB39Q9Y376 341 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 ADGRA3Q8IWK6 1321 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 TBL1XO60907 577 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 FKBP6O75344 327 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 PYGMP11217 842 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 PAX3P23760 479 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 GRK4P32298 578 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 DCTN2Q13561 401 aaKnown RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 MILR1Q7Z6M3 343 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 DUSP9Q99956 384 aaKnown RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 HAO1Q9UJM8 370 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 SLC27A5Q9Y2P5 690 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 GIT1Q9Y2X7 761 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 A0A088AWK7 358 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF10P21506 573 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 DLG4P78352 724 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 CRY1Q16526 586 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 STK40Q8N2I9 435 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 BBS4Q96RK4 519 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF112Q9UJU3 913 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 MAP2P11137 1827 aaKnown RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 PTPN4P29074 926 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 CNGA2Q16280 664 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 AGKQ53H12 422 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 TTC33Q6PID6 262 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 DCLRE1AQ6PJP8 1040 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 IZUMO2Q6UXV1 221 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 TMC5Q6UXY8 1006 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 MARK2Q7KZI7 788 aaKnown RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 PRDM16Q9HAZ2 1276 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 MID1IP1Q9NPA3 183 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 APOC4-APOC2K7ER74 178 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 DDX3XO00571 662 aaKnown RBP eCLIP13.36□□□□□ -0.277e-10■■□□□ 12.8
PTPRF-215ENST00000496447 APOC2P02655 101 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 CYP1A1P04798 512 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 ATP6V1B2P21281 511 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 GTF2BQ00403 316 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 GRIK3Q13003 919 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 VN1R5Q7Z5H4 357 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 NECAB2Q7Z6G3 386 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 CDK20Q8IZL9 346 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 KLRG1Q96E93 195 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 TMEM120AQ9BXJ8 343 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 KLHL4Q9C0H6 718 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.36□□□□□ -0.271e-6■■□□□ 13.5
PTPRF-215ENST00000496447 CATSPERZQ9NTU4 200 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 ANKRD6Q9Y2G4 727 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 A0A087X0B3 334 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 ABLIM1O14639 778 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 SEC22BO75396 215 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 TRIP4Q15650 581 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-215ENST00000496447 PRRG3Q9BZD7 231 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 MIR1-1HGQ9H1L0 117 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 DIABLOQ9NR28 239 aa13.36□□□□□ -0.27
PTPRF-215ENST00000496447 RBL1P28749 1068 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 USP39Q53GS9 565 aaKnown RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 CYP20A1Q6UW02 462 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 RBM23Q86U06 439 aaKnown RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 STK32AQ8WU08 396 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 MTMR8Q96EF0 704 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 HSFY1Q96LI6 401 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 HIPK3Q9H422 1215 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 CDHR5Q9HBB8 845 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ZMYND8Q9ULU4 1186 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 F8VP50 259 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 KPNA4O00629 521 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 AMD1P17707 334 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 SLC34A1Q06495 639 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 PPP3CAQ08209 521 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 KCNMA1Q12791 1236 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 C15orf59Q2T9L4 293 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 FAM183BPQ6ZVS7 135 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 FNDC5Q8NAU1 212 aa13.35□□□□□ -0.27
PTPRF-215ENST00000496447 KCTD14Q9BQ13 255 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-215ENST00000496447 ATAD3AQ9NVI7 634 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms