RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SLC1A6P48664 564 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 DLG1Q12959 904 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 PDE1CQ14123 709 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 RABGAP1LQ5R372 815 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 MORN1Q5T089 497 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 PAOXQ6QHF9 649 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 CXCL17Q6UXB2 119 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 LIMS2Q7Z4I7 341 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 FAM35AQ86V20 835 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 GCNAQ96QF7 691 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 GORASP1Q9BQQ3 440 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 KCNK4Q9NYG8 393 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 EMCNQ9ULC0 261 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 ST3GAL5Q9UNP4 418 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 FIS1Q9Y3D6 152 aa16.9■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF487B1APH4 448 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 ATP9BO43861 1147 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 TM7SF2O76062 418 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 SNUPNO95149 360 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 AP2B1P63010 937 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 CDC42EP1Q00587 391 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 FSCN1Q16658 493 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 MAVSQ7Z434 540 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 TOP6BLQ8N6T0 577 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 USP33Q8TEY7 942 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 NMD3Q96D46 503 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 AGAP2Q99490 1192 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 CCDC106Q9BWC9 280 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 OCEL1Q9H607 264 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 WDR6Q9NNW5 1121 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 TMEM216Q9P0N5 145 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 GTF2IRD1Q9UHL9 959 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 ANGPTL2Q9UKU9 493 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 STAP1Q9ULZ2 295 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 A0A088AWK7 358 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 AIM2O14862 343 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 DNAJC6O75061 913 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 ADRA1BP35368 520 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 TPI1P60174 286 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 DPYSQ14117 519 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 LRRC8BQ6P9F7 803 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 PTAR1Q7Z6K3 402 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 ARHGAP24Q8N264 748 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 SIRPGQ9P1W8 387 aa16.89■□□□□ 0.29
CCDC88B-210ENST00000494566 F8W810 466 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 DCLK1O15075 740 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ZBTB24O43167 697 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 GSRP00390 522 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PGK1P00558 417 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 POMCP01189 267 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 GSTT1P30711 240 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 FDFT1P37268 417 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 CPT1AP50416 773 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 DAOAP59103 153 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 BTKQ06187 659 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 NIPAL4Q0D2K0 466 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 KRT72Q14CN4 511 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ZRSR2Q15696 482 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 CERCAMQ5T4B2 595 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ARCQ7LC44 396 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 SPATA6LQ8N4H0 392 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 C2orf69Q8N8R5 385 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 SNX31Q8N9S9 440 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 DNAAF3Q8N9W5 541 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 USP13Q92995 863 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 NT5C3BQ969T7 300 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 WDR55Q9H6Y2 383 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 MAGEA13PA6NCF6 341 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ARSAP15289 507 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PTPN3P26045 913 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 CRHR1P34998 444 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 GLRBP48167 497 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PURAQ00577 322 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ZBTB17Q13105 803 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PDK1Q15118 436 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 TAF1CQ15572 869 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PPM1LQ5SGD2 360 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 CWF19L1Q69YN2 538 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PLD6Q8N2A8 252 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 PNPLA1Q8N8W4 532 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 GATA6Q92908 595 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ZNF669Q96BR6 464 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 ZNF212Q9UDV6 495 aa16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 APOBEC2Q9Y235 224 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-210ENST00000494566 HACD1B0YJ81 288 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 GABRDO14764 452 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 SIN3BO75182 1162 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 TGDSO95455 350 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 FESP07332 822 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 ITGA2BP08514 1039 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 SCNN1AP37088 669 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 BRCC3P46736 316 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 RAB27AP51159 221 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 IRF9Q00978 393 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 FRMD7Q6ZUT3 714 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 MFSD3Q96ES6 412 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 DNAJC1Q96KC8 554 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 SLC2A13Q96QE2 648 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 TMEM209Q96SK2 561 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms