RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MRPL58Q14197 206 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 FAM171A1Q5VUB5 890 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 NLRP9Q7RTR0 991 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 C14orf80Q86SX3 495 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 CEP57Q86XR8 500 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TTC9BQ8N6N2 239 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 SLAIN1Q8ND83 568 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 SIRPGQ9P1W8 387 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 MAFKO60675 156 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TGDSO95455 350 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 GATMP50440 423 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TUBP50607 506 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 ANKRD20A4Q4UJ75 823 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 AFMIDQ63HM1 303 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TBC1D1Q86TI0 1168 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TRIM42Q8IWZ5 723 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 ABI1Q8IZP0 508 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 DBF4BQ8NFT6 615 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 SLC39A13Q96H72 371 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 ZNF419Q96HQ0 510 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 CASD1Q96PB1 797 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TRIM55Q9BYV6 548 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 GMIPQ9P107 970 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 DCTN4Q9UJW0 460 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TLR6Q9Y2C9 796 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 FAM237BA0A1B0GVD1 139 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 GP5P40197 560 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 ASRGL1Q7L266 308 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 ARHGAP18Q8N392 663 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 ATAD1Q8NBU5 361 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 B3GALT6Q96L58 329 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 IL12RB2Q99665 862 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 CPNE1Q99829 537 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 GPR62Q9BZJ7 368 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 IL37Q9NZH6 218 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 PCDHB7Q9Y5E2 793 aa21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 MRPL42Q9Y6G3 142 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-208ENST00000492980 PSMD3O43242 534 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 ATP9BO43861 1147 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 CDK7P50613 346 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 MLLT6P55198 1093 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 KCNJ2P63252 427 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 ELF3P78545 371 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 PIK3R6Q5UE93 754 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 NAPEPLDQ6IQ20 393 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 ZNF280DQ6N043 979 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 RTL3Q8N8U3 475 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 IL22Q9GZX6 179 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 MARCH5Q9NX47 278 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 MAGEB16A2A368 324 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 OR6C75A6NL08 312 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 MATN3O15232 486 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 UNC5CO95185 931 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 BPGMP07738 259 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 NQO1P15559 274 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 CDH17Q12864 832 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 PDE1CQ14123 709 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 STXBP5Q5T5C0 1151 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 GRTP1Q5TC63 336 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 CES4AQ5XG92 561 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 KYAT3Q6YP21 454 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 FAM126BQ8IXS8 530 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 E2F7Q96AV8 911 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 KLHL29Q96CT2 875 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 MFSD3Q96ES6 412 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 C1orf74Q96LT6 269 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 TMEM51Q9NW97 253 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 MPP6Q9NZW5 540 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 TXNDC16Q9P2K2 825 aa21.53■■□□□ 1.04
CCDC88B-208ENST00000492980 BIRC5O15392 142 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 TPH1P17752 444 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 FGFR3P22607 806 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 BST1Q10588 318 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 LINC00523Q86TU6 105 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 NUDCD3Q8IVD9 361 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 SPATA22Q8NHS9 363 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 GPR152Q8TDT2 470 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 FCRL5Q96RD9 977 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 KCNK13Q9HB14 408 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 GLOD4Q9HC38 313 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 TXLNGQ9NUQ3 528 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 HCSTQ9UBK5 93 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 EMCNQ9ULC0 261 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 SOX13Q9UN79 622 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 MAGED2Q9UNF1 606 aaPredicted RBP21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 TRIM33Q9UPN9 1127 aa21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 AAR2Q9Y312 384 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-208ENST00000492980 A0A0G2JND7 137 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 FAM92AA1XBS5 289 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 WASH4PA8MWX3 477 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 AP3B1O00203 1094 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 GLRA3O75311 464 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 SLC11A1P49279 550 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 TBX4P57082 545 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 BFSP2Q13515 415 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 CHI3L2Q15782 390 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 ATG16L1Q676U5 607 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.52■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms