RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 SRGAP2BP0DMP2 458 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 GNAT1P11488 350 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 GRK2P25098 689 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 MPSTP25325 297 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 NMBRP28336 390 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 CCNA1P78396 465 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 SNAPC2Q13487 334 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 CCNIQ14094 377 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 DPYSQ14117 519 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 DUSP28Q4G0W2 176 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 PAN2Q504Q3 1202 aaKnown RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 CMPK2Q5EBM0 449 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 TWF2Q6IBS0 349 aaKnown RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 OTOP3Q7RTS5 596 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 PSTKQ8IV42 348 aaKnown RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 SPATA22Q8NHS9 363 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 LENG8Q96PV6 779 aaPredicted RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 RBBP8Q99708 897 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 CPNE1Q99829 537 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 LRRC40Q9H9A6 602 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 S100A14Q9HCY8 104 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 COL1A2P08123 1366 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 G3V2L1 256 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 ITGAXP20702 1163 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 PEX2P28328 305 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 SPRP35270 261 aaPredicted RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 GARSP41250 739 aaKnown RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 NUMBP49757 651 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 LBRQ14739 615 aaKnown RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 SNX17Q15036 470 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 SFT2D3Q587I9 215 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 URGCPQ8TCY9 931 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 ZNF560Q96MR9 790 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 MLPHQ9BV36 600 aaPredicted RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 SIK2Q9H0K1 926 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 C1orf21Q9H246 121 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 DDX43Q9NXZ2 648 aaKnown RBP13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 IPPQ9Y573 584 aa13.84□□□□□ -0.19
HERPUD1-204ENST00000439977 RNASEH1O60930 286 aaKnown RBP13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 DAB1O75553 588 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 LYNP07948 512 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 TBL3Q12788 808 aaKnown RBP13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 TBCCQ15814 346 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 GRTP1Q5TC63 336 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 FAM219BQ5XKK7 198 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 TMEM198Q66K66 360 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 KCNMB4Q86W47 210 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 TDRD5Q8NAT2 981 aaKnown RBP13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 HNRNPABQ99729 332 aaKnown RBP13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 SGIP1Q9BQI5 828 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 GATA5Q9BWX5 397 aaPredicted RBP13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 NUF2Q9BZD4 464 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 TASP1Q9H6P5 420 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 NMRAL1Q9HBL8 299 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 POMPQ9Y244 141 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 AP1G2O75843 785 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 TOMM70O94826 608 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 AP2A1O95782 977 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 LIMK2P53671 638 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 BEX3Q00994 111 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 MPP3Q13368 585 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 ARHGAP36Q6ZRI8 547 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 NPLOC4Q8TAT6 608 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 SGF29Q96ES7 293 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 MAML3Q96JK9 1138 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 OMDQ99983 421 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 ATXN3LQ9H3M9 355 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 CRTAC1Q9NQ79 661 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 GDAP2Q9NXN4 497 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 IGSF9Q9P2J2 1179 aa13.83□□□□□ -0.2
HERPUD1-204ENST00000439977 MAGEA13PA6NCF6 341 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 BTBD19C9JJ37 291 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 TXNDC9O14530 226 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 CFLARO15519 480 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 MT-CYBP00156 380 aaPredicted RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 JUNP05412 331 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 COX4I1P13073 169 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 RPL34P49207 117 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 HARS2P49590 506 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 NAGLUP54802 743 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 GRM3Q14832 879 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 PAFAH1B3Q15102 231 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 TRIP10Q15642 601 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 SPANXN3Q5MJ09 141 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 UBXN11Q5T124 520 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 RWDD4Q6NW29 188 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 GPR142Q7Z601 462 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 RNF34Q969K3 372 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 CMTM5Q96DZ9 223 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 VPS39Q96JC1 886 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 SCYL1Q96KG9 808 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 NAT9Q9BTE0 207 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 FAM124BQ9H5Z6 455 aaPredicted RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 WDR6Q9NNW5 1121 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 EIF2B3Q9NR50 452 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 BUD23O43709 281 aaKnown RBP13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 FAM200BP0CF97 657 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 RAG1P15918 1043 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 SERPINB8P50452 374 aa13.82□□□□□ -0.2
HERPUD1-204ENST00000439977 AQP4P55087 323 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms