RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 K7ERQ8 282 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 SLC31A1O15431 190 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 THAP12O43422 761 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PLRG1O43660 514 aaKnown RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 CNTN5O94779 1100 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 APOEP02649 317 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 CTSLP07711 333 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PRLRP16471 622 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 CKMT2P17540 419 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 TFE3P19532 575 aaPredicted RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 GLDCP23378 1020 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 HNF1BP35680 557 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 RXRGP48443 463 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 ARRB1P49407 418 aaPredicted RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 CLDN2P57739 230 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 YWHAZP63104 245 aaKnown RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 LRRC63Q05C16 580 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 KCNH2Q12809 1159 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 SFSWAPQ12872 951 aaKnown RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 NNTQ13423 1086 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 ELAVL3Q14576 367 aaKnown RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 STILQ15468 1287 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 DLG2Q15700 870 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PROX2Q3B8N5 592 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 ZNF542PQ5EBM4 170 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 TTI2Q6NXR4 508 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PCSK4Q6UW60 755 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 TMC6Q7Z403 805 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PRPF39Q86UA1 669 aaKnown RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 PASD1Q8IV76 773 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 DEFB106AQ8N104 65 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 MFSD2AQ8NA29 543 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 ZNF606Q8WXB4 792 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 BTN2A3PQ96KV6 586 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 FCRL3Q96P31 734 aaPredicted RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 NOX5Q96PH1 765 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 UBL7Q96S82 380 aaPredicted RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 IRX2Q9BZI1 471 aaPredicted RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 POPDC2Q9HBU9 364 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 UBE2TQ9NPD8 197 aaPredicted RBP8.34□□□□□ -1.07
VIM-202ENST00000421459 ANLNQ9NQW6 1124 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 TMPRSS4Q9NRS4 437 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 VANGL2Q9ULK5 521 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PPM1HQ9ULR3 514 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 CTNND2Q9UQB3 1225 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 ATMQ13315 3056 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 APC2O95996 2303 aa8.34□□□□□ -1.08
VIM-202ENST00000421459 BECN2A8MW95 431 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 E9PAM4 449 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 I6L893 689 aaPredicted RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 BIN1O00499 593 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 CASC3O15234 703 aaKnown RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 PMM2O15305 246 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 FFAR2O15552 330 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ATP9BO43861 1147 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 SNAP91O60641 907 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 RNGTTO60942 597 aaKnown RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 ENDOD1O94919 500 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 SMC2O95347 1197 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 MT-CO3P00414 261 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 C1SP09871 688 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 THEGLP0DJG4 465 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 KRT10P13645 584 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ZNF18P17022 549 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 DGKAP23743 735 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ACADSBP45954 432 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 GCNT1Q02742 428 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 NME3Q13232 169 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 PDCLQ13371 301 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 AUHQ13825 339 aaKnown RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 STAT4Q14765 748 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 RTP5Q14D33 572 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ARHGAP44Q17R89 818 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 SLC45A4Q5BKX6 768 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 PIP5KL1Q5T9C9 394 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 LINGO4Q6UY18 593 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 LRRC69Q6ZNQ3 347 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 TMEM110Q86TL2 294 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 TRIM59Q8IWR1 403 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ATP6V0D2Q8N8Y2 350 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ZNF557Q8N988 423 aaPredicted RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 CHST14Q8NCH0 376 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 NELFBQ8WX92 580 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 OR8D1Q8WZ84 308 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 RNF34Q969K3 372 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 FAM131CQ96AQ9 280 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ARRDC3Q96B67 414 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 CEP63Q96MT8 703 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 RPRD1AQ96P16 312 aaPredicted RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 SPAG5Q96R06 1193 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 CPXM1Q96SM3 734 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 PSMB7Q99436 277 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 FEM1AQ9BSK4 669 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 CRACR2AQ9BSW2 395 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 SIK2Q9H0K1 926 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 OSBPL2Q9H1P3 480 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 FAM204AQ9H8W3 233 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 ERVMER34-1Q9H9K5 563 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.33□□□□□ -1.08
VIM-202ENST00000421459 DDIT4Q9NX09 232 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms