RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MORF4L2Q15014 288 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 ACBD5Q5T8D3 534 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 CAPN12Q6ZSI9 719 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 PCGF5Q86SE9 256 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 ARID3BQ8IVW6 561 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 UMODL1-AS1Q8N2C9 162 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 MICALL1Q8N3F8 863 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 EIF1ADQ8N9N8 165 aaKnown RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.8□□□□□ -1.8
RTN4-208ENST00000404909 USP13Q92995 863 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 CAVIN3Q969G5 261 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 HDAC11Q96DB2 347 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 FAM161BQ96MY7 647 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 MUC3BQ9H195 1237 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 SEMA4AQ9H3S1 761 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 NOL6Q9H6R4 1146 aaKnown RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 TDP1Q9NUW8 608 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 UBP1Q9NZI7 540 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 CLUHO75153 1309 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 COL4A4P53420 1690 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 ANAPC1Q9H1A4 1944 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 WASH4PA8MWX3 477 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CBX4O00257 560 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZBTB24O43167 697 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 GREM1O60565 184 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MAFKO60675 156 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 OPHN1O60890 802 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 AVILO75366 819 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CLDN11O75508 207 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TMEM63AO94886 807 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ACSL3O95573 720 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 C1RP00736 705 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 RHOCP08134 193 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 IGFBP4P22692 258 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 HSD17B3P37058 310 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 NDST2P52849 883 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 PMS2P54278 862 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CDH4P55283 916 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ITKQ08881 620 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 HYAL1Q12794 435 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CDH18Q13634 790 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 HIF1AQ16665 826 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 BBS9Q3SYG4 887 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TEX44Q53QW1 395 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 C6orf118Q5T5N4 469 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CFAP58Q5T655 872 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 GET4Q7L5D6 327 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZBED8Q8IZ13 594 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TDRD5Q8NAT2 981 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 LEMD2Q8NC56 503 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 OR7D4Q8NG98 312 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 OR52K2Q8NGK3 314 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 OR2W6PQ8NHA6 318 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZSCAN18Q8TBC5 510 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 PRCCQ92733 491 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 AZIN2Q96A70 460 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 RTP4Q96DX8 246 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 C9orf72Q96LT7 481 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 RUFY1Q96T51 708 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 BRD8Q9H0E9 1235 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 NSUN3Q9H649 340 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 SFXN1Q9H9B4 322 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SAYSD1Q9NPB0 183 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 RBM22Q9NW64 420 aaKnown RBP eCLIP3.79□□□□□ -1.8
RTN4-208ENST00000404909 RSPH14Q9UHP6 348 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ARHGAP26Q9UNA1 814 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MTCL1Q9Y4B5 1905 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 SHROOM3Q8TF72 1996 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 A0A1B0GVM2 712 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 GOLGA6BA6NDN3 693 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TCAF2A6NFQ2 919 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MATN3O15232 486 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MTSS1O43312 755 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CCNCP24863 283 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 DDX6P26196 483 aaKnown RBP eCLIP3.79□□□□□ -1.84e-30■□□□□ 10.7
RTN4-208ENST00000404909 HSPA9P38646 679 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 VIPR2P41587 438 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MAPKAPK2P49137 400 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 GNA12Q03113 381 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 PDIA2Q13087 525 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 SPARCL1Q14515 664 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SLMAPQ14BN4 828 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 FASTKD3Q14CZ7 662 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 KYNUQ16719 465 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SKIDA1Q1XH10 827 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ANO4Q32M45 955 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 PARP15Q460N3 678 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 FSCBQ5H9T9 825 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 PRSS36Q5K4E3 855 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 UBAP2Q5T6F2 1119 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 RHBDF2Q6PJF5 856 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 Q6ZNB5 142 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 OTOP3Q7RTS5 596 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 KDELC2Q7Z4H8 507 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ANKMY2Q8IV38 441 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MFN1Q8IWA4 741 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CCDC117Q8IWD4 279 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 PDIK1LQ8N165 341 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZCCHC9Q8N567 271 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 PDCD7Q8N8D1 485 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms