RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 GPRASP2Q96D09 838 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 BIN3Q9NQY0 253 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 DRG1Q9Y295 367 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 CFAP43Q8NDM7 1665 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SNAPC4Q5SXM2 1469 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SLC33A1O00400 549 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 SLC22A1O15245 554 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 NCAM2O15394 837 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CCNT2O60583 730 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 RASGRP1O95267 797 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 RARBP10826 455 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 MTA1Q13330 715 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CA9Q16790 459 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CDCA5Q96FF9 252 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 ARHGEF4Q9NR80 690 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 ZNF232Q9UNY5 417 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 AP4B1Q9Y6B7 739 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 BLMP54132 1417 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 FAM196BA6NMK8 535 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CES2O00748 559 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 KIAA0391O15091 583 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 ITGA6P23229 1130 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 DDX6P26196 483 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIG3-202ENST00000378526 TCF7P36402 384 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 IDH2P48735 452 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 CBLBQ13191 982 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PTPN21Q16825 1174 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 DCAF4L1Q3SXM0 396 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 C6orf52Q5T4I8 152 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 ZNF517Q6ZMY9 492 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 GALNT12Q8IXK2 581 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 LNX2Q8N448 690 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CDYL2Q8N8U2 506 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 DNAJB14Q8TBM8 379 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TBCKQ8TEA7 893 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 MAP4K1Q92918 833 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 NSMCE3Q96MG7 304 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TRNT1Q96Q11 434 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 SMURF2Q9HAU4 748 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TAS2R3Q9NYW6 316 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 EVPLQ92817 2033 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 GNG14A0A1W2PPG7 69 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SLC30A4O14863 429 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TGM6O95932 706 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 MYBPC1Q00872 1141 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 ARCQ7LC44 396 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 OAFQ86UD1 273 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SLC30A5Q8TAD4 765 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 WDR41Q9HAD4 459 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PRKAG3Q9UGI9 489 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 MFHAS1Q9Y4C4 1052 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PCDHGB3Q9Y5G1 929 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 POLR1CO15160 346 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 NDUFB5O43674 189 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PROCP04070 461 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 FGFR3P22607 806 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 MAGEA3P43357 314 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 ACTR3P61158 418 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TPGS1Q6ZTW0 290 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PLBD2Q8NHP8 589 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CEP76Q8TAP6 659 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 CASKIN2Q8WXE0 1202 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TCF12Q99081 682 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 LEF1Q9UJU2 399 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 IFNA2P01563 188 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SCNN1BP51168 640 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 NR1I3Q14994 352 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 AKR1C8PQ5T2L2 129 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 FMR1NBQ8N0W7 255 aaPredicted RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 RBM4BQ9BQ04 359 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 SPOCK3Q9BQ16 436 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 RBM4Q9BWF3 364 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 ABCG8Q9H221 673 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 RGCCQ9H4X1 137 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SNX6Q9UNH7 406 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 AAR2Q9Y312 384 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 KIF1BO60333 1816 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 M0QYV0 167 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PDE8AO60658 829 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 VPS26AO75436 327 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 OR6A2O95222 327 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 EPCAMP16422 314 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 VPS26BQ4G0F5 336 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 PLA2G4FQ68DD2 849 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SLC26A11Q86WA9 606 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 FAM126BQ8IXS8 530 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 TBC1D21Q8IYX1 336 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SIK2Q9H0K1 926 aa8.87□□□□□ -0.99
LIG3-202ENST00000378526 SAMD4AQ9UPU9 718 aaKnown RBP8.87□□□□□ -0.99
LIG3-202ENST00000378526 C2orf81A6NN90 581 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 DISC1C4P0D8 188 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 GSTT2P0CG29 244 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 CPA3P15088 417 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 PTGER2P43116 358 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 CACNB1Q02641 598 aaPredicted RBP8.86□□□□□ -0.99
LIG3-202ENST00000378526 TFDP3Q5H9I0 405 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 SMIM15Q7Z3B0 74 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 REPS1Q96D71 796 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 BTBD9Q96Q07 612 aa8.86□□□□□ -0.99
LIG3-202ENST00000378526 TSNAXQ99598 290 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms