RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SLC35G2Q8TBE7 412 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 HSPH1Q92598 858 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 NKD2Q969F2 451 aaPredicted RBP13.71□□□□□ -0.21
VPS28-202ENST00000377348 MRGPRX1Q96LB2 322 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 SPON2Q9BUD6 331 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 UVRAGQ9P2Y5 699 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 VPS51Q9UID3 782 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 TFR2Q9UP52 801 aa13.71□□□□□ -0.21
VPS28-202ENST00000377348 DOCK4Q8N1I0 1966 aa13.71□□□□□ -0.22
VPS28-202ENST00000377348 PIEZO1Q92508 2521 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 ILVBLA1L0T0 632 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 EEF2KO00418 725 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 SIN3BO75182 1162 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 PROSCO94903 275 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 MT-CO1P00395 513 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 SRPRAP08240 638 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 RARAP10276 462 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 VAV1P15498 845 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 BCKDHBP21953 392 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 GJC1P36383 396 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 ACVRL1P37023 503 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 SSR1P43307 286 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 MAGEA1P43355 309 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 MAPKAPK2P49137 400 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 TPI1P60174 286 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 GNA12Q03113 381 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 SULT2A1Q06520 285 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 CAMK2GQ13555 558 aaPredicted RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 SIM2Q14190 667 aaPredicted RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 HNRNPA1L2Q32P51 320 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 USP39Q53GS9 565 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 PPP6R3Q5H9R7 873 aaPredicted RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 LINGO4Q6UY18 593 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 RAD9BQ6WBX8 426 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 CEP68Q76N32 757 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 CCDC170Q8IYT3 715 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 RTL3Q8N8U3 475 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 SUMF1Q8NBK3 374 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 GAB3Q8WWW8 586 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 EPC1Q9H2F5 836 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 ATP13A1Q9HD20 1204 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 PRSS16Q9NQE7 514 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 SLC25A13Q9UJS0 675 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 SMG5Q9UPR3 1016 aaKnown RBP13.7□□□□□ -0.22
VPS28-202ENST00000377348 EML5Q05BV3 1969 aa13.7□□□□□ -0.22
VPS28-202ENST00000377348 RIF1Q5UIP0 2472 aaKnown RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 PRR23AA6NEV1 266 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 K7ERQ8 282 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 CBX4O00257 560 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 ZBTB24O43167 697 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 LCA5LO95447 670 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 LMNAP02545 664 aaKnown RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 GOT1P17174 413 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 CNR2P34972 360 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 CYLC1P35663 651 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 TAS2R40P59535 323 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 KRT83P78385 493 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 MESDQ14696 234 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 MAP7D1Q3KQU3 841 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 IL31Q6EBC2 164 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 KBTBD6Q86V97 674 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 TMPRSS6Q8IU80 811 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 TMTC1Q8IUR5 882 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 TMEM139Q8IV31 216 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 DCAF4L2Q8NA75 395 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 KDM1BQ8NB78 822 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 OR2T3Q8NH03 318 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 RFFLQ8WZ73 363 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 ARHGEF2Q92974 986 aaKnown RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 PPP1R9BQ96SB3 815 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 BAG1Q99933 345 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 NCAPGQ9BPX3 1015 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 C2orf49Q9BVC5 232 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 NOL6Q9H6R4 1146 aaKnown RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS28-202ENST00000377348 IMPACTQ9P2X3 320 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 SUN2Q9UH99 717 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 PCDHA13Q9Y5I0 950 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 ACTL7AQ9Y615 435 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 EPN1Q9Y6I3 576 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 SDK1Q7Z5N4 2213 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 CKAP5Q14008 2032 aa13.69□□□□□ -0.22
VPS28-202ENST00000377348 EP300Q09472 2414 aaPredicted RBP13.69□□□□□ -0.22
VPS28-202ENST00000377348 WASH4PA8MWX3 477 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 EIF3CLB5ME19 914 aaKnown RBP13.68□□□□□ -0.22
VPS28-202ENST00000377348 SMAD6O43541 496 aaKnown RBP13.68□□□□□ -0.22
VPS28-202ENST00000377348 RAMP2O60895 175 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 ZMPSTE24O75844 475 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 NDUFA10O95299 355 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 SRCP12931 536 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 NNMTP40261 264 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 P2RY2P41231 377 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 MRE11P49959 708 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 ARF5P84085 180 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 SPA17Q15506 151 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 DLG2Q15700 870 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 DPYSL2Q16555 572 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 ACCSLQ4AC99 568 aa13.68□□□□□ -0.22
VPS28-202ENST00000377348 ATP13A4Q4VNC1 1196 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms