RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C9orf57Q5W0N0 161 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 C4orf22Q6V702 233 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 MFN1Q8IWA4 741 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 APPL2Q8NEU8 664 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 APBB2Q92870 758 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 TRAPPC9Q96Q05 1148 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 RUVBL2Q9Y230 463 aaKnown RBP12.39□□□□□ -0.43
CLIP3-201ENST00000360535 CDY2AQ9Y6F7 541 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 CDY1Q9Y6F8 540 aa12.39□□□□□ -0.43
CLIP3-201ENST00000360535 TRIM13O60858 407 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 JUNP05412 331 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 NELFEP18615 380 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 NMBRP28336 390 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ALDH1A3P47895 512 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 TPI1P60174 286 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 FLOT2Q14254 428 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 GK3PQ14409 553 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 CNGA3Q16281 694 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 FBXL19Q6PCT2 694 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 PAOXQ6QHF9 649 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 RPS27LQ71UM5 84 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 KCNMB4Q86W47 210 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 SPATA24Q86W54 205 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ACMSDQ8TDX5 336 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ACTRT2Q8TDY3 377 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 KCTD4Q8WVF5 259 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 LRGUKQ96M69 825 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 TSNARE1Q96NA8 513 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 CPNE1Q99829 537 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 LRRC40Q9H9A6 602 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 HUS1O60921 280 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ALDH1A2O94788 518 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 NCAM1P13591 858 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 PIK3R1P27986 724 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 GRIA2P42262 883 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 GRIA4P48058 902 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 SERPINB8P50452 374 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 CDK7P50613 346 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 CTBP1Q13363 440 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ART3Q13508 389 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ITGA7Q13683 1181 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 GRM3Q14832 879 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ANKRD20A4Q4UJ75 823 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 GRTP1Q5TC63 336 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 RWDD4Q6NW29 188 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 HOMEZQ8IX15 550 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 RNF169Q8NCN4 708 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 SREK1Q8WXA9 508 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 RBBP8Q99708 897 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 SPATA16Q9BXB7 569 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ILKAPQ9H0C8 392 aaPredicted RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 DNAJC28Q9NX36 388 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 SSC5DA1L4H1 1573 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 hCG_2014768A0A024R1R8 64 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ZNF195O14628 629 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 CCNT2O60583 730 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 XRCC1P18887 633 aaPredicted RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 NFKB1P19838 968 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 PMLP29590 882 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 THOP1P52888 689 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 POU6F1Q14863 301 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 LSM12Q3MHD2 195 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ARL13AQ5H913 290 aaPredicted RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 STEAP4Q687X5 459 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 LAYNQ6UX15 382 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 OTOP3Q7RTS5 596 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 KBTBD7Q8WVZ9 684 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 DCPSQ96C86 337 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 VPS39Q96JC1 886 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 DNAJC1Q96KC8 554 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 NPAS2Q99743 824 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 CYP4F12Q9HCS2 524 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 DDX43Q9NXZ2 648 aaKnown RBP12.38□□□□□ -0.43
CLIP3-201ENST00000360535 ADA2Q9NZK5 511 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 SORCS3Q9UPU3 1222 aa12.38□□□□□ -0.43
CLIP3-201ENST00000360535 PEX1O43933 1283 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SLC25A27O95847 323 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SETSIPP0DME0 302 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 PTPN3P26045 913 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 GRM5P41594 1212 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 TKTL1P51854 596 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 INHBEP58166 350 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 POU5F1BQ06416 359 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SLC25A52Q3SY17 297 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 AAGABQ6PD74 315 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SLC41A1Q8IVJ1 513 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SPATA22Q8NHS9 363 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 OLFM3Q96PB7 478 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 KCNK16Q96T55 309 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 ACE2Q9BYF1 805 aaPredicted RBP12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SEMA6AQ9H2E6 1030 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 VCX3BQ9H321 246 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 ANLNQ9NQW6 1124 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 IRAK4Q9NWZ3 460 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 DDIT4Q9NX09 232 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 PCDHB12Q9Y5F1 795 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 NRP1O14786 923 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 USP17L7P0C7H9 530 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 HOXA11P31270 313 aaPredicted RBP12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SOX4Q06945 474 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms