RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DNA2P51530 1060 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 CLCN5P51795 746 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 TP53INP2Q8IXH6 220 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 UMODL1-AS1Q8N2C9 162 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 PQLC3Q8N755 202 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 USP33Q8TEY7 942 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 ARHGEF2Q92974 986 aaKnown RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 HES6Q96HZ4 224 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 RNF157Q96PX1 679 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 ALS2CR12Q96Q35 445 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 PSMB7Q99436 277 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 SPON2Q9BUD6 331 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 GLDCP23378 1020 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 DMC1Q14565 340 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 POLD3Q15054 466 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 EIF4HQ15056 248 aaKnown RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 PTPRNQ16849 979 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 ZNF783Q6ZMS7 281 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 RCOR2Q8IZ40 523 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 C17orf53Q8N3J3 647 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 SYNPOQ8N3V7 929 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 FBXL6Q8N531 539 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 ZNF513Q8N8E2 541 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 TMEM105Q8N8V8 129 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 TRIM58Q8NG06 486 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 EXD1Q8NHP7 514 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 RPLP0P6Q8NHW5 317 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 POLR3BQ9NW08 1133 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 TIMM44O43615 452 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 SNAP91O60641 907 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 CDKN2BP42772 138 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 RPS9P46781 194 aaKnown RBP22.7■■□□□ 1.22
SHMT1-203ENST00000354098 MEI1Q5TIA1 1274 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 TMCO3Q6UWJ1 677 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 SPOCD1Q6ZMY3 1216 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 ARHGAP12Q8IWW6 846 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 ALLCQ8N6M5 410 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 IL17RCQ8NAC3 791 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 SLC39A8Q9C0K1 460 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 MAGEH1Q9H213 219 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 LRRC19Q9H756 370 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 ATP13A1Q9HD20 1204 aa22.7■■□□□ 1.22
SHMT1-203ENST00000354098 MIF4GDA9UHW6 222 aaKnown RBP22.69■■□□□ 1.22
SHMT1-203ENST00000354098 WASH3PC4AMC7 463 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 RASA4BC9J798 803 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 RASA4O43374 803 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 KRT10P13645 584 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 RWDD2BP57060 319 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 TAZQ16635 292 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 AFMIDQ63HM1 303 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 NCBP2-AS2Q69YL0 99 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 IL31Q6EBC2 164 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 AADACL2Q6P093 401 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 CCDC50Q8IVM0 306 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 CCDC33Q8N5R6 958 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 HMCESQ96FZ2 354 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 RPL10LQ96L21 214 aaKnown RBP22.69■■□□□ 1.22
SHMT1-203ENST00000354098 ACE2Q9BYF1 805 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-203ENST00000354098 C2orf42Q9NWW7 574 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 THAP10Q9P2Z0 257 aaPredicted RBP22.69■■□□□ 1.22
SHMT1-203ENST00000354098 ATG2BQ96BY7 2078 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 CUL9Q8IWT3 2517 aa22.69■■□□□ 1.22
SHMT1-203ENST00000354098 ZNF487B1APH4 448 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 CBX4O00257 560 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 GPR37L1O60883 481 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ATP5BP06576 529 aaKnown RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 DLDP09622 509 aaKnown RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 PYGMP11217 842 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 WASP42768 502 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 STK19P49842 368 aaPredicted RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 NDST2P52849 883 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 YBEYP58557 167 aaPredicted RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 MRPS21P82921 87 aaKnown RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ECT2LQ008S8 904 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ZNF234Q14588 700 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 VSIG1Q86XK7 387 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 UBL4BQ8N7F7 174 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 UCMAQ8WVF2 138 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 MRGPRX3Q96LB0 322 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 CHRDQ9H2X0 955 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 CACNA2D2Q9NY47 1150 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 DONSONQ9NYP3 566 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 VPS51Q9UID3 782 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 PLA2G4CQ9UP65 541 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ERVW-1Q9UQF0 538 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ZMPSTE24O75844 475 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 KLF8O95600 359 aaPredicted RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 HNRNPLP14866 589 aaKnown RBP eCLIP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ADCY2Q08462 1091 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 MTAPQ13126 283 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ZNF211Q13398 564 aaPredicted RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 ZNF569Q5MCW4 686 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 DCAF12L1Q5VU92 463 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 LINGO4Q6UY18 593 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 RFX6Q8HWS3 928 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 CHPFQ8IZ52 775 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 DCAF4L2Q8NA75 395 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 TXNDC5Q8NBS9 432 aaKnown RBP22.68■■□□□ 1.22
SHMT1-203ENST00000354098 MYO19Q96H55 970 aa22.68■■□□□ 1.22
SHMT1-203ENST00000354098 RBM41Q96IZ5 413 aaKnown RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms