RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 APOL1O14791 398 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DGAT1O75907 488 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 PIGRP01833 764 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ICAM1P05362 532 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ERVK-10P10266 1014 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CDH3P22223 829 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DCKP27707 260 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 MAGEA12P43365 314 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ABCG1P45844 678 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ZNF143P52747 638 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 PTK2BQ14289 1009 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DLG2Q15700 870 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CYP2A13Q16696 494 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 GPR107Q5VW38 600 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ANKRD26P1Q6NSI1 321 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 NIPAL1Q6NVV3 410 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CASC4Q6P4E1 433 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 KCNT2Q6UVM3 1135 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CES3Q6UWW8 571 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DNAJC14Q6Y2X3 702 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 CHSY3Q70JA7 882 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TRIM50Q86XT4 487 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 HERC6Q8IVU3 1022 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ZNF786Q8N393 782 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 PCDH20Q8N6Y1 951 aaKnown RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 ITPKCQ96DU7 683 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ASB9Q96DX5 294 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ATXN7L3BQ96GX2 97 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 UHRF1Q96T88 793 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 XYLT2Q9H1B5 865 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 LHX5Q9H2C1 402 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DBNDD1Q9H9R9 158 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CXorf21Q9HAI6 301 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 C20orf96Q9NUD7 363 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 SMOXQ9NWM0 555 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SEPT9Q9UHD8 586 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 CNOT6Q9ULM6 557 aaKnown RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 PCDHGA7Q9Y5G6 932 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 BTAF1O14981 1849 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SIP14410 1827 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 A0A087WXM4 84 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TMEM114B3SHH9 223 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 E7ENX8 843 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 HDAC3O15379 428 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 AKAP10O43572 662 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TADA2AO75478 443 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 GCATO75600 419 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 BAIAP3O94812 1187 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TGM2P21980 687 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 MGAT1P26572 445 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 EPHX2P34913 555 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 PTGER2P43116 358 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 KPNA1P52294 538 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 RPS3AP61247 264 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 ESRRGP62508 458 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 RHDQ02161 417 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 GBE1Q04446 702 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TNK2Q07912 1038 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 RALGDSQ12967 914 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ART3Q13508 389 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SEMA5AQ13591 1074 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TRIM25Q14258 630 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 RAB39AQ14964 217 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 HERC3Q15034 1050 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 CCDC153Q494R4 210 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 FAM102AQ5T9C2 384 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 SWSAP1Q6NVH7 229 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 C16orf87Q6PH81 154 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SLC2A7Q6PXP3 512 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 EEPD1Q7L9B9 569 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 CLEC14AQ86T13 490 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 CCDC60Q8IWA6 550 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 DCLK2Q8N568 766 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SLC15A4Q8N697 577 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SLC7A14Q8TBB6 771 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 RXFP2Q8WXD0 754 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TWNKQ96RR1 684 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 MUC3BQ9H195 1237 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 EFCAB1Q9HAE3 211 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ASNSD1Q9NWL6 643 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TUBA8Q9NY65 449 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 ADA2Q9NZK5 511 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 NCKIPSDQ9NZQ3 722 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 GMPR2Q9P2T1 348 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 HMGXB4Q9UGU5 601 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SFMBT1Q9UHJ3 866 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 FZD1Q9UP38 647 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TMEM98Q9Y2Y6 226 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 PCDHA10Q9Y5I2 948 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 COPG1Q9Y678 874 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 DOCK5Q9H7D0 1870 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TCRBV3S1A0A5B6 114 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 C2CD4BA6NLJ0 364 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 KCNU1A8MYU2 1149 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 GIPC1O14908 333 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SLC22A2O15244 555 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SPTLC1O15269 473 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TRIM13O60858 407 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 TIPRLO75663 272 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 GRAP2O75791 330 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms