RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 GP5P40197 560 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SLC1A6P48664 564 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ARHGAP8P85298 464 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PCSK7Q16549 785 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ANKRD20A4Q4UJ75 823 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 KHDC1Q4VXA5 237 aaKnown RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SLC39A12Q504Y0 691 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 RAB41Q5JT25 222 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 FSTL4Q6MZW2 842 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 RAPH1Q70E73 1250 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF280BQ86YH2 543 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 CNTD1Q8N815 330 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SMC1BQ8NDV3 1235 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PTCD3Q96EY7 689 aaKnown RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 B3GALT6Q96L58 329 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 BTBD10Q9BSF8 475 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ABT1Q9ULW3 272 aaKnown RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 Q9Y3F1 56 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PTCH2Q9Y6C5 1203 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 GSC2O15499 205 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SOAT2O75908 522 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 NEBLO76041 1014 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 GSRP00390 522 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 CYBAP13498 195 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ARRB2P32121 409 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SLC5A3P53794 718 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 GJA9P57773 515 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 LPIN1Q14693 890 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 KPNB1Q14974 876 aaKnown RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 DDR2Q16832 855 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 NOMO2Q5JPE7 1267 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 TFAP2DQ7Z6R9 452 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 KCNMB4Q86W47 210 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SPATA2LQ8IUW3 424 aaPredicted RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 TRIM42Q8IWZ5 723 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 CASP10Q92851 521 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 NTAN1Q96AB6 310 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 C15orf41Q9Y2V0 281 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 TTC24A2A3L6 582 aaPredicted RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 GLRA3O75311 464 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PAGE1O75459 146 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 TGDSO95455 350 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 FGF3P11487 239 aaPredicted RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 CXCR3P49682 368 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 USP4Q13107 963 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PEX6Q13608 980 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF460Q14592 562 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PCLAFQ15004 111 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 WDR60Q8WVS4 1066 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 RSPH1Q8WYR4 309 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF419Q96HQ0 510 aaPredicted RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 FAM161BQ96MY7 647 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 C7orf26Q96N11 449 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 SAR1AQ9NR31 198 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 MAN1C1Q9NR34 630 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ZCWPW2A0A1B0GU75 182 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 HMBSP08397 361 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 MX2P20592 715 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 GRK4P32298 578 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 CCR10P46092 362 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SEPT6Q14141 434 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 MBLAC2Q68D91 279 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 ATPAF2Q8N5M1 289 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 MAGEC3Q8TD91 643 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 FCRL2Q96LA5 508 aaPredicted RBP10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SLC9A7Q96T83 725 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 WWP1Q9H0M0 922 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 GBA3Q9H227 469 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 EIF2B3Q9NR50 452 aaKnown RBP10.55□□□□□ -0.72
LIMA1-201ENST00000341247 THAP1Q9NVV9 213 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 MCM8Q9UJA3 840 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 A0A096LPK6 155 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 F9P00740 461 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SERPINB6P35237 376 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 OR1G1P47890 313 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 TSPY1Q01534 308 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 CTBP1Q13363 440 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 TEDDM1Q5T9Z0 273 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 CD300LGQ6UXG3 332 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SLC25A41Q8N5S1 370 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 TEX9Q8N6V9 391 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SHKBP1Q8TBC3 707 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 FAM167BQ9BTA0 163 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 NMUR1Q9HB89 426 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 KCNK4Q9NYG8 393 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SPTBN5Q9NRC6 3674 aaKnown RBP10.55□□□□□ -0.72
LIMA1-201ENST00000341247 A0A1W2PQH9 124 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 KLF11O14901 512 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 KRT36O76013 467 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 PRKCGP05129 697 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 PRKAR2AP13861 404 aaKnown RBP10.55□□□□□ -0.72
LIMA1-201ENST00000341247 NCF2P19878 526 aaPredicted RBP10.55□□□□□ -0.72
LIMA1-201ENST00000341247 CALB2P22676 271 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 RPL9P32969 192 aaKnown RBP10.55□□□□□ -0.72
LIMA1-201ENST00000341247 CHRNA4P43681 627 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 ITKQ08881 620 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 GALNT2Q10471 571 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 MPP3Q13368 585 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 NAA25Q14CX7 972 aa10.55□□□□□ -0.72
LIMA1-201ENST00000341247 SPANXN3Q5MJ09 141 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms