RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 ATP2A3Q93084 1043 aa16.92■□□□□ 0.3
SHOX-201ENST00000334060 THG1LQ9NWX6 298 aaKnown RBP16.92■□□□□ 0.3
SHOX-201ENST00000334060 MARK1Q9P0L2 795 aa16.92■□□□□ 0.3
SHOX-201ENST00000334060 TBC1D30Q9Y2I9 924 aa16.92■□□□□ 0.3
SHOX-201ENST00000334060 CHD5Q8TDI0 1954 aa16.92■□□□□ 0.3
SHOX-201ENST00000334060 ATG2BQ96BY7 2078 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 KCNK1O00180 336 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CLDN11O75508 207 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CD160O95971 181 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 RHOCP08134 193 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 STK19P49842 368 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 GNA12Q03113 381 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 ZNF177Q13360 481 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 NOMO1Q15155 1222 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 TAB3Q8N5C8 712 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.91■□□□□ 0.3
SHOX-201ENST00000334060 ARHGEF2Q92974 986 aaKnown RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 RPL10LQ96L21 214 aaKnown RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 TMEM121Q9BTD3 319 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 SPON2Q9BUD6 331 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 MTG2Q9H4K7 406 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CATSPERBQ9H7T0 1116 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 POLR3BQ9NW08 1133 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 APOC4-APOC2K7ER74 178 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 FGF10O15520 208 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 HOXC11O43248 304 aaPredicted RBP16.91■□□□□ 0.3
SHOX-201ENST00000334060 CACNG3O60359 315 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 NFATC1O95644 943 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 APOC2P02655 101 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 PDGFRLQ15198 375 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CCDC181Q5TID7 509 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 EMC10Q5UCC4 262 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CHST9Q7L1S5 443 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 ADIPOR2Q86V24 386 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 KLHL7Q8IXQ5 586 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 UMODL1-AS1Q8N2C9 162 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 USP33Q8TEY7 942 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CYB5D2Q8WUJ1 264 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 OTUB2Q96DC9 234 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 FEM1AQ9BSK4 669 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 CARD6Q9BX69 1037 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 FAM53CQ9NYF3 392 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 MUTYHQ9UIF7 546 aa16.91■□□□□ 0.3
SHOX-201ENST00000334060 BDP1A6H8Y1 2624 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 KIAA1549LQ6ZVL6 1849 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 C19orf67A6NJJ6 358 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 KRIT1O00522 736 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 SLC9A3R1O14745 358 aaPredicted RBP16.9■□□□□ 0.3
SHOX-201ENST00000334060 RAMP2O60895 175 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 TJP3O95049 919 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 PEX11BO96011 259 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 ZSCAN5DPP0CG00 497 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 RBL1P28749 1068 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 ARF5P84085 180 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 ZNF354CQ86Y25 554 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 RNF135Q8IUD6 432 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 PLCD3Q8N3E9 789 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 ZNF366Q8N895 744 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 NOA1Q8NC60 698 aaKnown RBP16.9■□□□□ 0.3
SHOX-201ENST00000334060 FIBINQ8TAL6 211 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 P3H4Q92791 437 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 DDX50Q9BQ39 737 aaKnown RBP16.9■□□□□ 0.3
SHOX-201ENST00000334060 MUC3BQ9H195 1237 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 FBXO10Q9UK96 956 aa16.9■□□□□ 0.3
SHOX-201ENST00000334060 TTC7AQ9ULT0 858 aaPredicted RBP16.9■□□□□ 0.3
SHOX-201ENST00000334060 ZNF487B1APH4 448 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 CBX4O00257 560 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 LIASO43766 372 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 MAFKO60675 156 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 ADH1CP00326 375 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 CYBBP04839 570 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 EIF3EP60228 445 aaKnown RBP16.89■□□□□ 0.3
SHOX-201ENST00000334060 GAD2Q05329 585 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 GALNT2Q10471 571 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 ZBTB17Q13105 803 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 POLD3Q15054 466 aaPredicted RBP16.89■□□□□ 0.3
SHOX-201ENST00000334060 ITPRIPL2Q3MIP1 535 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 VSIG1Q86XK7 387 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 SLC35B2Q8TB61 432 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 E2F7Q96AV8 911 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 NSMCE3Q96MG7 304 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 GGA2Q9UJY4 613 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 CA14Q9ULX7 337 aa16.89■□□□□ 0.3
SHOX-201ENST00000334060 MUSKO15146 869 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 SMAD6O43541 496 aaKnown RBP16.89■□□□□ 0.29
SHOX-201ENST00000334060 ZMPSTE24O75844 475 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 GARSP41250 739 aaKnown RBP16.89■□□□□ 0.29
SHOX-201ENST00000334060 TFDP2Q14188 446 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 TRIP13Q15645 432 aaPredicted RBP16.89■□□□□ 0.29
SHOX-201ENST00000334060 PLEKHG6Q3KR16 790 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 PITRM1Q5JRX3 1037 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 IL31Q6EBC2 164 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 CCNYQ8ND76 341 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 SPATA4Q8NEY3 305 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 ACOX2Q99424 681 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 VPS51Q9UID3 782 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 VPS28Q9UK41 221 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 PIAS3Q9Y6X2 628 aa16.89■□□□□ 0.29
SHOX-201ENST00000334060 WASH3PC4AMC7 463 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms