RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 TPI1P60174 286 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 BASP1P80723 227 aaKnown RBP17.22■□□□□ 0.35
CPSF4-201ENST00000292476 TAF10Q12962 218 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 DNAJC3Q13217 504 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 PLD1Q13393 1074 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 SLC1A5Q15758 541 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 BBS9Q3SYG4 887 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 HP1BP3Q5SSJ5 553 aaPredicted RBP17.22■□□□□ 0.35
CPSF4-201ENST00000292476 C1orf228Q6PIY5 440 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 RFX8Q6ZV50 586 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 TBC1D1Q86TI0 1168 aaPredicted RBP17.22■□□□□ 0.35
CPSF4-201ENST00000292476 TTC9BQ8N6N2 239 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 BANPQ8N9N5 519 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 LRRC39Q96DD0 335 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 RAB3IPQ96QF0 476 aaPredicted RBP17.22■□□□□ 0.35
CPSF4-201ENST00000292476 YY1AP1Q9H869 796 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 KIF9Q9HAQ2 790 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 NMUR1Q9HB89 426 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 CD248Q9HCU0 757 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 GMIPQ9P107 970 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 OR12D3Q9UGF7 316 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 LZTS1Q9Y250 596 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 HEY1Q9Y5J3 304 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 TEX264Q9Y6I9 313 aa17.22■□□□□ 0.35
CPSF4-201ENST00000292476 A0A1W2PPM1 405 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 WFS1O76024 890 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 CTSAP10619 480 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 RPL17P18621 184 aaKnown RBP17.21■□□□□ 0.35
CPSF4-201ENST00000292476 SERPINB6P35237 376 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 ERVK-21P61565 698 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 USP46P62068 366 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 SEMA3BQ13214 749 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 ADGRE1Q14246 886 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 TAF12Q16514 161 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 FYB2Q5VWT5 728 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 LVRNQ6Q4G3 990 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 CHSY1Q86X52 802 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 SLC44A1Q8WWI5 657 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 ZNF75CPQ92670 426 aaPredicted RBP17.21■□□□□ 0.35
CPSF4-201ENST00000292476 GAS2L1Q99501 681 aaPredicted RBP17.21■□□□□ 0.35
CPSF4-201ENST00000292476 CRISPLD1Q9H336 500 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 CYP4F11Q9HBI6 524 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 ARHGEF4Q9NR80 690 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 DONSONQ9NYP3 566 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 COL6A3P12111 3177 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 EYSQ5T1H1 3165 aa17.21■□□□□ 0.35
CPSF4-201ENST00000292476 ADAM12O43184 909 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 HNRNPCL1O60812 293 aaKnown RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 BANF1O75531 89 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 IL1BP01584 269 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 IGFBP4P22692 258 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PAFAH1B3Q15102 231 aaKnown RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 SEPT7Q16181 437 aaKnown RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PARP6Q2NL67 630 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 SNX30Q5VWJ9 437 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 CAPN12Q6ZSI9 719 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 FAM47EQ6ZV65 393 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 TCEAL8Q8IYN2 117 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PYROXD2Q8N2H3 581 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 STKLD1Q8NE28 680 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 GDPD5Q8WTR4 605 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 C10orf82Q8WW14 230 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 INPP5DQ92835 1189 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 CASP10Q92851 521 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 C1orf74Q96LT6 269 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 BRD8Q9H0E9 1235 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 LRMDAQ9H2I8 198 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 USP29Q9HBJ7 922 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 UXTQ9UBK9 157 aaPredicted RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 ZNF180Q9UJW8 692 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 GRID1Q9ULK0 1009 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PLXNA3P51805 1871 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 KIAA1671Q9BY89 1806 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 TCRBV7S3A2A0A539 114 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PRRG1O14668 218 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 TRDMT1O14717 391 aaKnown RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PPP1R12AO14974 1030 aaPredicted RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 APOEP02649 317 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 ZDHHC11BP0C7U3 371 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 TROVE2P10155 538 aaKnown RBP eCLIP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 ATF6P18850 670 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 AMPD1P23109 780 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 TBX4P57082 545 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 NRG1Q02297 640 aaPredicted RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 GAD2Q05329 585 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 SLC18A2Q05940 514 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 SF3A3Q12874 501 aaKnown RBP eCLIP17.2■□□□□ 0.343e-6■■■■□ 19.7
CPSF4-201ENST00000292476 DPYSQ14117 519 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 PDK1Q15118 436 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 SLC45A4Q5BKX6 768 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 NCBP2-AS2Q69YL0 99 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 ITIH5Q86UX2 942 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 ZC3H18Q86VM9 953 aaKnown RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 AGGF1Q8N302 714 aaeCLIP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 ATP6V0D2Q8N8Y2 350 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 MCUQ8NE86 351 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 GIPC2Q8TF65 315 aa17.2■□□□□ 0.34
CPSF4-201ENST00000292476 TRMT2BQ96GJ1 504 aaKnown RBP17.2■□□□□ 0.34
CPSF4-201ENST00000292476 MYRFLQ96LU7 910 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms