RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TMCO4Q5TGY1 634 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 HFE2Q6ZVN8 426 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 SNX31Q8N9S9 440 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 ACVR1CQ8NER5 493 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 APBB2Q92870 758 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 GATA5Q9BWX5 397 aaPredicted RBP12.91□□□□□ -0.34
LIG1-201ENST00000263274 ASB3Q9Y575 518 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 NUP205Q92621 2012 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 ZBTB24O43167 697 aaPredicted RBP12.91□□□□□ -0.34
LIG1-201ENST00000263274 FOLH1Q04609 750 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 PDK3Q15120 406 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 CYTH1Q15438 398 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 GRIK4Q16099 956 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 GSTA3Q16772 222 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 CNPY1Q3B7I2 92 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 LIN52Q52LA3 116 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 SLC26A9Q7LBE3 791 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 DPP9Q86TI2 863 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 SATL1Q86VE3 508 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 KCNMB4Q86W47 210 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 CXorf38Q8TB03 319 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 CYP4F12Q9HCS2 524 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 DDIT4Q9NX09 232 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 STAP1Q9ULZ2 295 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 PHIPQ8WWQ0 1821 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 FAM72CH0Y354 149 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 DPYSL4O14531 572 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 PFDN1O60925 122 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SLC25A27O95847 323 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 UQCRBP14927 111 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 ALDH1A3P47895 512 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SERPINB8P50452 374 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 POU6F1Q14863 301 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 FAM72AQ5TYM5 149 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 FAM72DQ6L9T8 149 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 FAM72BQ86X60 149 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 FBXW8Q8N3Y1 598 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 ACMSDQ8TDX5 336 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 RCN3Q96D15 328 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 CPNE1Q99829 537 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 VCX3AQ9NNX9 186 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SLC4A7Q9Y6M7 1214 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 DFFAO00273 331 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 PEX1O43933 1283 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 IL1BP01584 269 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 PAX3P23760 479 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 CRABP2P29373 138 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 MATKP42679 507 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 DYNC1I2Q13409 638 aaKnown RBP12.9□□□□□ -0.34
LIG1-201ENST00000263274 CMPK2Q5EBM0 449 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 RNF111Q6ZNA4 994 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 ACAD11Q709F0 780 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 ZNF354CQ86Y25 554 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 RAB3IL1Q8TBN0 382 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 KCTD4Q8WVF5 259 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 CDH19Q9H159 772 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 RNF39Q9H2S5 420 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SUDS3Q9H7L9 328 aaPredicted RBP12.9□□□□□ -0.34
LIG1-201ENST00000263274 GPAMQ9HCL2 828 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 GPRC5DQ9NZD1 345 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SORCS3Q9UPU3 1222 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.9□□□□□ -0.34
LIG1-201ENST00000263274 BEST1O76090 585 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 GSRP00390 522 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 NELFEP18615 380 aaKnown RBP12.9□□□□□ -0.34
LIG1-201ENST00000263274 NFKB1P19838 968 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 PMLP29590 882 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 PTPN9P43378 593 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 IREB2P48200 963 aaKnown RBP12.9□□□□□ -0.34
LIG1-201ENST00000263274 TKTL1P51854 596 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 CTBP1Q13363 440 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 LAMC2Q13753 1193 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 GRTP1Q5TC63 336 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 RNF169Q8NCN4 708 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 IPMKQ8NFU5 416 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 TRAPPC9Q96Q05 1148 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SERPINI1Q99574 410 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 SCN1AP35498 2009 aa12.9□□□□□ -0.34
LIG1-201ENST00000263274 MCM3APO60318 1980 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 PIK3R1P27986 724 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 SOX11P35716 441 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 GRIA4P48058 902 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 TUBB3Q13509 450 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 SEL1L3Q68CR1 1132 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PDZD4Q76G19 769 aaPredicted RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 PCDH20Q8N6Y1 951 aaKnown RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 PNPLA1Q8N8W4 532 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 VPS39Q96JC1 886 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 SEMA6AQ9H2E6 1030 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 FAM96AQ9H5X1 160 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 SPTLC1O15269 473 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 COQ9O75208 318 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 TKTP29401 623 aaKnown RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 MAGEA3P43357 314 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PLK1P53350 603 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 SLC12A2P55011 1212 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 NIPAL4Q0D2K0 466 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 GRM3Q14832 879 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 ANKRD20A4Q4UJ75 823 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms