RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 RFX6Q8HWS3 928 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 CCDC28AQ8IWP9 274 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 OVCA2Q8WZ82 227 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 WASF1Q92558 559 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 CCDC136Q96JN2 1154 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 MARK4Q96L34 752 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 PLEKHF1Q96S99 279 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 MAGEB5Q9BZ81 275 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 ASNSD1Q9NWL6 643 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 KLHL42Q9P2K6 505 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 ZMYND8Q9ULU4 1186 aaPredicted RBP5.72□□□□□ -1.49
VPS29-212ENST00000621131 ABCC6O95255 1503 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 ALS2Q96Q42 1657 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 FAM208AQ9UK61 1670 aaKnown RBP5.72□□□□□ -1.49
VPS29-212ENST00000621131 SPATA31A5Q5VU36 1347 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 SPATA31A7Q8IWB4 1347 aa5.72□□□□□ -1.49
VPS29-212ENST00000621131 NFAT5O94916 1531 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 A0A1W2PPC4 97 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 TTC34A8MYJ7 566 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 B4DGG1 531 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 MATN1P21941 496 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 MMP8P22894 467 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 GABRB3P28472 473 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 SOX2P48431 317 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 SLC12A2P55011 1212 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 SEMA3BQ13214 749 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 BFSP2Q13515 415 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 ATP1A4Q13733 1029 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.71□□□□□ -1.5
VPS29-212ENST00000621131 SULT6B1Q6IMI4 303 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 ACSM6Q6P461 480 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 ZNF793Q6ZN11 406 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 BRINP3Q76B58 766 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 BEND5Q7L4P6 421 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 CCDC150Q8NCX0 1101 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 ZNF845Q96IR2 970 aaPredicted RBP5.71□□□□□ -1.5
VPS29-212ENST00000621131 SENP7Q9BQF6 1050 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 FAM234AQ9H0X4 552 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 MOV10Q9HCE1 1003 aaKnown RBP5.71□□□□□ -1.5
VPS29-212ENST00000621131 DISP2A7MBM2 1401 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 TNS3Q68CZ2 1445 aa5.71□□□□□ -1.5
VPS29-212ENST00000621131 DLG5Q8TDM6 1919 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 CAMTA1Q9Y6Y1 1673 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 IGKV2D-30A0A075B6S6 120 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 CCDC187A0A096LP49 1063 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 TRBV5-3A0A0A0MS03 114 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 IGLV5-39A0A0G2JS06 123 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 ZSCAN9O15535 394 aaPredicted RBP5.7□□□□□ -1.5
VPS29-212ENST00000621131 NDUFS1P28331 727 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 HOXC9P31274 260 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 PRIM2P49643 509 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 THBS3P49746 956 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 NANOS2P60321 138 aaKnown RBP5.7□□□□□ -1.5
VPS29-212ENST00000621131 ELF2Q15723 593 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 KLHL22Q53GT1 634 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 MANEAQ5SRI9 462 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 CCDC144NLQ6NUI1 221 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 UEVLDQ8IX04 471 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 CCDC33Q8N5R6 958 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 OR52L2PQ8NGH6 319 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 MSI2Q96DH6 328 aaKnown RBP5.7□□□□□ -1.5
VPS29-212ENST00000621131 SNX27Q96L92 541 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 PCDHAC1Q9H158 963 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 LAS1LQ9Y4W2 734 aaKnown RBP5.7□□□□□ -1.5
VPS29-212ENST00000621131 GLI3P10071 1580 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 FANCIQ9NVI1 1328 aa5.7□□□□□ -1.5
VPS29-212ENST00000621131 COL22A1Q8NFW1 1626 aaPredicted RBP5.7□□□□□ -1.5
VPS29-212ENST00000621131 M0QZQ0 153 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 HTATSF1O43719 755 aaKnown RBP5.69□□□□□ -1.5
VPS29-212ENST00000621131 ENO1P06733 434 aaKnown RBP5.69□□□□□ -1.5
VPS29-212ENST00000621131 TFEBP19484 476 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 IL6STP40189 918 aaPredicted RBP5.69□□□□□ -1.5
VPS29-212ENST00000621131 STAT6P42226 847 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 STT3AP46977 705 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 AGTR2P50052 363 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 SLC5A9Q2M3M2 681 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 HSP90AB2PQ58FF8 381 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 PIK3AP1Q6ZUJ8 805 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 MEPCEQ7L2J0 689 aaKnown RBP5.69□□□□□ -1.5
VPS29-212ENST00000621131 PELI3Q8N2H9 469 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 IP6K1Q92551 441 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 TUBB6Q9BUF5 446 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 TTLL2Q9BWV7 592 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 CHMP4BQ9H444 224 aaKnown RBP5.69□□□□□ -1.5
VPS29-212ENST00000621131 PAPOLBQ9NRJ5 636 aaKnown RBP5.69□□□□□ -1.5
VPS29-212ENST00000621131 MSRB1Q9NZV6 116 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 IGSF1Q8N6C5 1336 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 KIF16BQ96L93 1317 aa5.69□□□□□ -1.5
VPS29-212ENST00000621131 APOL1O14791 398 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 IPO8O15397 1037 aaKnown RBP5.68□□□□□ -1.5
VPS29-212ENST00000621131 DHHO43323 396 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 EPN2O95208 641 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 NDST3O95803 873 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 ALADP13716 330 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 DMWDQ09019 674 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 MIDNQ504T8 468 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 SKAP1Q86WV1 359 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 FTSJ3Q8IY81 847 aaKnown RBP5.68□□□□□ -1.5
VPS29-212ENST00000621131 LAS2Q8IYD9 372 aa5.68□□□□□ -1.5
VPS29-212ENST00000621131 ARL14EPQ8N8R7 260 aaPredicted RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms