RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 DISP2A7MBM2 1401 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ARFGEF2Q9Y6D5 1785 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 NPPAP01160 153 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SLC18A2Q05940 514 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ADGRE1Q14246 886 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 KCNJ8Q15842 424 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 TCEAL6Q6IPX3 200 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 BEND4Q6ZU67 534 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CLYBLQ8N0X4 340 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 FAM162AQ96A26 154 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SRPK1Q96SB4 655 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 AGPAT1Q99943 283 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PCDHB4Q9Y5E5 795 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PTPRUQ92729 1446 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 HLA-DOAP06340 250 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ROR1Q01973 937 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 DNASE1L3Q13609 305 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 FBXO43Q4G163 708 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 TREML1Q86YW5 311 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ADHFE1Q8IWW8 467 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 FCGR1BQ92637 280 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 LGALS13Q9UHV8 139 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 METTL21EPA6NDL7 271 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 RHOBTB3O94955 611 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 IMPDH1P20839 514 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 RAB4BP61018 213 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PCSK7Q16549 785 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 LDHAL6AQ6ZMR3 332 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 MB21D2Q8IYB1 491 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 MARVELD2Q8N4S9 558 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SNIP1Q8TAD8 396 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 PELOQ9BRX2 385 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 C8orf33Q9H7E9 229 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 FASTKD1Q53R41 847 aaKnown RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CCDC71Q8IV32 467 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 SIMC1Q8NDZ2 872 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 RDM1Q8NG50 284 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 CCDC126Q96EE4 140 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ANXA1P04083 346 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ITGA4P13612 1032 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 GNA13Q14344 377 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 GALNT3Q14435 633 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 LIN54Q6MZP7 749 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 WDR49Q8IV35 697 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 RHBDF1Q96CC6 855 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 OTUB1Q96FW1 271 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-213ENST00000613099 ARMT1Q9H993 441 aa5.04□□□□□ -1.6
VPS13D-213ENST00000613099 IL7P13232 177 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ITGA2P17301 1181 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 BGNP21810 368 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 OSBPP22059 807 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF135P52742 658 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 SURF1Q15526 300 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 PLEKHG7Q6ZR37 379 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 SNX20Q7Z614 316 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 DNAAF3Q8N9W5 541 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ART4Q93070 314 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ISOC1Q96CN7 298 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 NUSAP1Q9BXS6 441 aaKnown RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 PDGFCQ9NRA1 345 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF451Q9Y4E5 1061 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 FRMPD4Q14CM0 1322 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 TEX46H3BTG2 121 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 SLC22A2O15244 555 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 CD3EAPO15446 510 aaKnown RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 CCNT2O60583 730 aaKnown RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 NAT2P11245 290 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 HNRNPH3P31942 346 aaKnown RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 RPA3P35244 121 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ZSWIM7Q19AV6 140 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 LHFPL3Q86UP9 236 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 TBC1D21Q8IYX1 336 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 DEDD2Q8WXF8 326 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 SNX19Q92543 992 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 RNFT2Q96EX2 444 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 SLC4A9Q96Q91 983 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 RACGAP1Q9H0H5 632 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ANKMY1Q9P2S6 941 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 XPO7Q9UIA9 1087 aaKnown RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 PCDHGB3Q9Y5G1 929 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 LRRN2O75325 713 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ARPP19P56211 112 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 TMEM17Q86X19 198 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 DDIASQ8IXT1 998 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 TCTEX1D2Q8WW35 142 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 TSPAN17Q96FV3 270 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 DPP7Q9UHL4 492 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 WASF2Q9Y6W5 498 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 MARF1Q9Y4F3 1742 aaKnown RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 SERPINB7O75635 380 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 NUDT7P0C024 238 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 COMTP21964 271 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF57Q68EA5 555 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ELMOD1Q8N336 334 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 TCP10LQ8TDR4 215 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ASB15Q8WXK1 588 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 ARMC7Q9H6L4 198 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 PCDHGC3Q9UN70 934 aa5.03□□□□□ -1.6
VPS13D-213ENST00000613099 POFUT2Q9Y2G5 429 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms