RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ERAP1Q9NZ08 941 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 TGFB3P10600 412 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 FOLH1Q04609 750 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 FLOT2Q14254 428 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 ZNF460Q14592 562 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 MARK2Q7KZI7 788 aaKnown RBP15.61■□□□□ 0.09
UPF1-204ENST00000596842 ZMAT2Q96NC0 199 aaKnown RBP15.61■□□□□ 0.09
UPF1-204ENST00000596842 NR1H4Q96RI1 486 aaPredicted RBP15.61■□□□□ 0.09
UPF1-204ENST00000596842 SORT1Q99523 831 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 NUP205Q92621 2012 aa15.61■□□□□ 0.09
UPF1-204ENST00000596842 LSM1O15116 133 aaKnown RBP15.6■□□□□ 0.09
UPF1-204ENST00000596842 GCATO75600 419 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 PMLP29590 882 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 NAGLUP54802 743 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 LAYNQ6UX15 382 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 TMEM110Q86TL2 294 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 FCRL3Q96P31 734 aaPredicted RBP15.6■□□□□ 0.09
UPF1-204ENST00000596842 TRAPPC9Q96Q05 1148 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 MPHOSPH6Q99547 160 aaKnown RBP15.6■□□□□ 0.09
UPF1-204ENST00000596842 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.6■□□□□ 0.09
UPF1-204ENST00000596842 MOCS1Q9NZB8 636 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 ADA2Q9NZK5 511 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 SNX10Q9Y5X0 201 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 CRABP2P29373 138 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 ATICP31939 592 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 SOX11P35716 441 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 GP5P40197 560 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 CDK7P50613 346 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 KLF10Q13118 480 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 TBCCQ15814 346 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 FSTL4Q6MZW2 842 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 ZNF567Q8N184 647 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 TTC16Q8NEE8 873 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 CELF6Q96J87 481 aaKnown RBP15.6■□□□□ 0.09
UPF1-204ENST00000596842 SPATA16Q9BXB7 569 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 GCOM2Q9BZD3 368 aaPredicted RBP15.6■□□□□ 0.09
UPF1-204ENST00000596842 ASB7Q9H672 318 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 TLK1Q9UKI8 766 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 ARID2Q68CP9 1835 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 PGAM1P18669 254 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 FGFR3P22607 806 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 ART3Q13508 389 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 GSTA3Q16772 222 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 PDSS2Q86YH6 399 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 PNPLA1Q8N8W4 532 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 SREK1Q8WXA9 508 aaKnown RBP15.6■□□□□ 0.09
UPF1-204ENST00000596842 GRIP2Q9C0E4 1043 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 SEMA6AQ9H2E6 1030 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 CHRAC1Q9NRG0 131 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 BFARQ9NZS9 450 aa15.6■□□□□ 0.09
UPF1-204ENST00000596842 STAMBPO95630 424 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 GSRP00390 522 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 MCF2P10911 925 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 UQCRBP14927 111 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 ZFXP17010 805 aaPredicted RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 FUT4P22083 530 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 GNL1P36915 607 aaPredicted RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 GK3PQ14409 553 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 CMPK2Q5EBM0 449 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 FSCBQ5H9T9 825 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 SLC7A14Q8TBB6 771 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 RNF139Q8WU17 664 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 RCN3Q96D15 328 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 QKIQ96PU8 341 aaKnown RBP eCLIP15.59■□□□□ 0.09
UPF1-204ENST00000596842 EIF2AQ9BY44 585 aaKnown RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 LRRC4Q9HBW1 653 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 PCDHGB4Q9UN71 923 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 TSC22D4Q9Y3Q8 395 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 NME7Q9Y5B8 376 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 PCDHGB5Q9Y5G0 923 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 BUD23O43709 281 aaKnown RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 ALDH1A3P47895 512 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 ZNF280AP59817 542 aaPredicted RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 TUBB3Q13509 450 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 SEPT6Q14141 434 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 NRF1Q16656 503 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 FAM219BQ5XKK7 198 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 SLC35F5Q8WV83 523 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 RNF34Q969K3 372 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 APBA2Q99767 749 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 MTMR10Q9NXD2 777 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 EEF2KO00418 725 aaKnown RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 MDM4O15151 490 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 TPSB2P20231 275 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 TSPY1Q01534 308 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 MSLNQ13421 630 aaPredicted RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 SEMA5AQ13591 1074 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 TTLL4Q14679 1199 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 TPSAB1Q15661 275 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 RIOX2Q8IUF8 465 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 FBXW8Q8N3Y1 598 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 PRPF18Q99633 342 aaKnown RBP15.59■□□□□ 0.09
UPF1-204ENST00000596842 ITGA11Q9UKX5 1188 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 VANGL2Q9ULK5 521 aa15.59■□□□□ 0.09
UPF1-204ENST00000596842 C15orf38-AP3S2A0A0A6YYH1 394 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 CSPG5O95196 566 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 PIGNO95427 931 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 C22orf31O95567 290 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 C2P06681 752 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 GRK2P25098 689 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms