RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	DUS2	Q9NX74	493 aa	Known RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	MTRR	Q9UBK8	725 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	WDR90	Q96KV7	1748 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	KIAA0355	O15063	1070 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	SPAG6	O75602	509 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	CNP	P09543	421 aa	Known RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	FSHR	P23945	695 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	MGAT3	Q09327	533 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	ZKSCAN8	Q15776	578 aa	Predicted RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	CHRDL2	Q6WN34	429 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	TBC1D1	Q86TI0	1168 aa	Predicted RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	SLC39A11	Q8N1S5	342 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	GRIN3A	Q8TCU5	1115 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	ARHGEF2	Q92974	986 aa	Known RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	TTC17	Q96AE7	1141 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	CLIC5	Q9NZA1	410 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	WHRN	Q9P202	907 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	SNX10	Q9Y5X0	201 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	BACE2	Q9Y5Z0	518 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	DGKI	O75912	1065 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	CRTAM	O95727	393 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	L1CAM	P32004	1257 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	SNRPD1	P62314	119 aa	Known RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	C17orf80	Q9BSJ5	609 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	SCML2	Q9UQR0	700 aa		10.34	□□□□□ -0.75
SMG6-213	ENST00000573166	PDE2A	O00408	941 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CTSA	P10619	480 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	TAC1	P20366	129 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CDK7	P50613	346 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	GBE1	Q04446	702 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CDH17	Q12864	832 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	MAP7D1	Q3KQU3	841 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PRELID2	Q8N945	189 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	ZDHHC6	Q9H6R6	413 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PNPLA8	Q9NP80	782 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	LATS2	Q9NRM7	1088 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	FBXW11	Q9UKB1	542 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	FIS1	Q9Y3D6	152 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CLUH	O75153	1309 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166		A0A0A0MRY4	1105 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166		A0A1B0GVM2	712 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	TCAF2	A6NFQ2	919 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	HMGB1P1	B2RPK0	211 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166		M0QZQ0	153 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	FSCN2	O14926	492 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	MAP3K13	O43283	966 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CDH16	O75309	829 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	RHOQ	P17081	205 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	NR1D1	P20393	614 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SERPINA4	P29622	427 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SCNN1A	P37088	669 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	MAX	P61244	160 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	USP10	Q14694	798 aa	Known RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	ZBTB6	Q15916	424 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	ZNF284	Q2VY69	593 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	ANKRD20A2	Q5SQ80	823 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	ARMC12	Q5T9G4	340 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	ANKRD20A1	Q5TYW2	823 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PDE12	Q6L8Q7	609 aa	Known RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	OLFML1	Q6UWY5	402 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PSTK	Q8IV42	348 aa	Known RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	TRIM42	Q8IWZ5	723 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	TTC30B	Q8N4P2	665 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CPA6	Q8N4T0	437 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	FBXO36	Q8NEA4	188 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	DDX1	Q92499	740 aa	Known RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PLD4	Q96BZ4	506 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SPATA13	Q96N96	652 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	KCTD15	Q96SI1	283 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CYP2S1	Q96SQ9	504 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	EGFL8	Q99944	293 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SEMA3C	Q99985	751 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CAPS2	Q9BXY5	557 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	GOLGA8R	I6L899	631 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	LIAS	O43766	372 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SNX2	O60749	519 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	BEST1	O76090	585 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	BRAF	P15056	766 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	MAGEA10	P43363	369 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	MAGOH	P61326	146 aa	Known RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SLC29A2	Q14542	456 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CCDC38	Q502W7	563 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	MRNIP	Q6NTE8	343 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	RTN4RL1	Q86UN2	441 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	CIR1	Q86X95	450 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	HS6ST3	Q8IZP7	471 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	SNX19	Q92543	992 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	KLHL5	Q96PQ7	755 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	TRIM54	Q9BYV2	358 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PFDN4	Q9NQP4	134 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	KCND1	Q9NSA2	647 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	PIGV	Q9NUD9	493 aa		10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	RCOR3	Q9P2K3	495 aa	Predicted RBP	10.33	□□□□□ -0.76
SMG6-213	ENST00000573166	DLEC1	Q9Y238	1755 aa		10.32	□□□□□ -0.76
SMG6-213	ENST00000573166	CD48	P09326	243 aa		10.32	□□□□□ -0.76
SMG6-213	ENST00000573166	PSMB4	P28070	264 aa		10.32	□□□□□ -0.76
SMG6-213	ENST00000573166	SPR	P35270	261 aa	Predicted RBP	10.32	□□□□□ -0.76
SMG6-213	ENST00000573166	ZNF132	P52740	706 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms