RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	PYROXD2	Q8N2H3	581 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	RTL3	Q8N8U3	475 aa	Known RBP	12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	USP33	Q8TEY7	942 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	EZH1	Q92800	747 aa	Predicted RBP	12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	C2orf49	Q9BVC5	232 aa	Predicted RBP	12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	ELOVL2	Q9NXB9	296 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	RCOR3	Q9P2K3	495 aa	Predicted RBP	12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	SLC25A13	Q9UJS0	675 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	VPS28	Q9UK41	221 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	CLEC4E	Q9ULY5	219 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	PLA2G4C	Q9UP65	541 aa		12.51	□□□□□ -0.41
SF3B3-208	ENST00000567250	CKAP5	Q14008	2032 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	ILVBL	A1L0T0	632 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	FAM72C	H0Y354	149 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	PSTPIP1	O43586	416 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	BUB1	O43683	1085 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	CNTN5	O94779	1100 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	DLD	P09622	509 aa	Known RBP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	RARA	P10276	462 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	CHRM1	P11229	460 aa	Predicted RBP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	HNRNPL	P14866	589 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	IL1R2	P27930	398 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	TIE1	P35590	1138 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	NNMT	P40261	264 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	KIR2DL1	P43626	348 aa	Predicted RBP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	PLK1	P53350	603 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	MTAP	Q13126	283 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	STARD3	Q14849	445 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	PDK2	Q15119	407 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	C2orf27A	Q580R0	203 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	FSCB	Q5H9T9	825 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	KCNT1	Q5JUK3	1230 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	FAM72A	Q5TYM5	149 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	LRRC38	Q5VT99	294 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	FAM72D	Q6L9T8	149 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	SERPINA13P	Q6UXR4	307 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	RFX8	Q6ZV50	586 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	SYT13	Q7L8C5	426 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	NLRP14	Q86W24	1093 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	FAM72B	Q86X60	149 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	C1orf210	Q8IVY1	113 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	CHPF	Q8IZ52	775 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	DCAF4L2	Q8NA75	395 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	DTWD2	Q8NBA8	298 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	KCTD15	Q96SI1	283 aa	Predicted RBP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	GPATCH2L	Q9NWQ4	482 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	DDX56	Q9NY93	547 aa	Known RBP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	MMP17	Q9ULZ9	603 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	NEU3	Q9UQ49	428 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	ADGRG1	Q9Y653	693 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	ATG2B	Q96BY7	2078 aa		12.5	□□□□□ -0.41
SF3B3-208	ENST00000567250	MACROD2	A1Z1Q3	448 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	WASH4P	A8MWX3	477 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	BUB1B	O60566	1050 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	RAMP2	O60895	175 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	PAPSS2	O95340	614 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	KLF8	O95600	359 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	SRPRA	P08240	638 aa	Known RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	HOXB2	P14652	356 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	TCF4	P15884	667 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	GOT1	P17174	413 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	COMT	P21964	271 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	NTSR1	P30989	418 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	SERPINB6	P35237	376 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	HCAR3	P49019	387 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	CDH6	P55285	790 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	YBEY	P58557	167 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	GNA12	Q03113	381 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	CA9	Q16790	459 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	FNDC3B	Q53EP0	1204 aa	Known RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	EGFLAM	Q63HQ2	1017 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	ADIPOR2	Q86V24	386 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	VSIG1	Q86XK7	387 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	SFTPA1	Q8IWL2	248 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	ALLC	Q8N6M5	410 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	IL17RC	Q8NAC3	791 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	KDM1B	Q8NB78	822 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	TXNDC5	Q8NBS9	432 aa	Known RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	KCTD6	Q8NC69	237 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	TPCN2	Q8NHX9	752 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	TTC17	Q96AE7	1141 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	LMLN	Q96KR4	655 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	ZNF670	Q9BS34	389 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	MAGEH1	Q9H213	219 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	KCNH6	Q9H252	994 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	PCDH18	Q9HCL0	1135 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	POLM	Q9NP87	494 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	PRMT8	Q9NR22	394 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	THAP10	Q9P2Z0	257 aa	Predicted RBP	12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	ZNF212	Q9UDV6	495 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	TFR2	Q9UP52	801 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	SLC8A2	Q9UPR5	921 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	HCN4	Q9Y3Q4	1203 aa		12.49	□□□□□ -0.41
SF3B3-208	ENST00000567250	CXorf51A	A0A1B0GTR3	108 aa		12.48	□□□□□ -0.41
SF3B3-208	ENST00000567250	RCCD1	A6NED2	376 aa		12.48	□□□□□ -0.41
SF3B3-208	ENST00000567250	ZBTB24	O43167	697 aa	Predicted RBP	12.48	□□□□□ -0.41
SF3B3-208	ENST00000567250	GALR2	O43603	387 aa	Predicted RBP	12.48	□□□□□ -0.41
SF3B3-208	ENST00000567250	ALDH1A2	O94788	518 aa		12.48	□□□□□ -0.41
SF3B3-208	ENST00000567250	MZF1	P28698	734 aa	Predicted RBP	12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms