RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 VANGL2Q9ULK5 521 aa15.33■□□□□ 0.04
CLN3-213ENST00000565047 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.33■□□□□ 0.04
CLN3-213ENST00000565047 IGLV3-10A0A075B6K4 115 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 A0A1B0GTW7 788 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 FAM170AA1A519 330 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 LGALS16A8MUM7 142 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 CNTN5O94779 1100 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 GFPT2O94808 682 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 UNGP13051 313 aaPredicted RBP15.32■□□□□ 0.04
CLN3-213ENST00000565047 PDGFRAP16234 1089 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 MMP8P22894 467 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 RNASE9P60153 205 aaKnown RBP15.32■□□□□ 0.04
CLN3-213ENST00000565047 ST8SIA6P61647 398 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 MYL5Q02045 173 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 UAP1L1Q3KQV9 507 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 ALFQ53S48 1182 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 RABGAP1LQ5R372 815 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 NAA35Q5VZE5 725 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 SASS6Q6UVJ0 657 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 USP30Q70CQ3 517 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 RNF34Q969K3 372 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 FAM131CQ96AQ9 280 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 ERGIC2Q96RQ1 377 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 PCDHB18PQ96TA0 734 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 WDCPQ9H6R7 721 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 SYNCQ9H7C4 482 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 SGK2Q9HBY8 427 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 TMEM63CQ9P1W3 806 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 ADAMTS1Q9UHI8 967 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 EIF2B4Q9UI10 523 aaKnown RBP15.32■□□□□ 0.04
CLN3-213ENST00000565047 SCML1Q9UN30 329 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 DAAM1Q9Y4D1 1078 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 SNX10Q9Y5X0 201 aa15.32■□□□□ 0.04
CLN3-213ENST00000565047 EDDM13A0A1B0GTR0 161 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 CLDN11O75508 207 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 MOCS3O95396 460 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 F9P00740 461 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 DNTTP04053 509 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 IGHV4-34P06331 123 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 SYPP08247 313 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 VAV1P15498 845 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 SULT1E1P49888 294 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 GRIK2Q13002 908 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 SYCP1Q15431 976 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 CST6Q15828 149 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 STX1AQ16623 288 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 RAB6CQ53S08 254 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 CCDC183Q5T5S1 534 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 FAM102AQ5T9C2 384 aaPredicted RBP15.31■□□□□ 0.04
CLN3-213ENST00000565047 AADATQ8N5Z0 425 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 DEFB124Q8NES8 71 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 BIRC7Q96CA5 298 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 RPRD1AQ96P16 312 aaPredicted RBP15.31■□□□□ 0.04
CLN3-213ENST00000565047 PSMB7Q99436 277 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 GTPBP2Q9BX10 602 aaKnown RBP15.31■□□□□ 0.04
CLN3-213ENST00000565047 BTBD1Q9H0C5 482 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 RAB6CQ9H0N0 254 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 PDCL3Q9H2J4 239 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 EBF2Q9HAK2 575 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 NLRC4Q9NPP4 1024 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 STAP1Q9ULZ2 295 aa15.31■□□□□ 0.04
CLN3-213ENST00000565047 ZFHX4Q86UP3 3567 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 MEI4A8MW99 385 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 MID1O15344 667 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 BCAT2O15382 392 aaPredicted RBP15.3■□□□□ 0.04
CLN3-213ENST00000565047 ATP9BO43861 1147 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 SEMA4FO95754 770 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 MBD3O95983 291 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 GNSP15586 552 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 NUMBP49757 651 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 GALCP54803 685 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 CDH4P55283 916 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 OXCT1P55809 520 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 GSCP56915 257 aaPredicted RBP15.3■□□□□ 0.04
CLN3-213ENST00000565047 DEUP1Q05D60 604 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 SULT2A1Q06520 285 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 SLC14A1Q13336 389 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 FKBP15Q5T1M5 1219 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 DBX2Q6ZNG2 339 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 MMAAQ8IVH4 418 aaKnown RBP15.3■□□□□ 0.04
CLN3-213ENST00000565047 CCDC117Q8IWD4 279 aaPredicted RBP15.3■□□□□ 0.04
CLN3-213ENST00000565047 ZCCHC9Q8N567 271 aaKnown RBP15.3■□□□□ 0.04
CLN3-213ENST00000565047 CFAP57Q96MR6 1250 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 ZDHHC5Q9C0B5 715 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 SIK2Q9H0K1 926 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 NEUROG2Q9H2A3 272 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 TMEM51Q9NW97 253 aa15.3■□□□□ 0.04
CLN3-213ENST00000565047 PCNX2A6NKB5 2137 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.29■□□□□ 0.04
CLN3-213ENST00000565047 TCRBV5S1A1TA0A578 114 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 OPHN1O60890 802 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 ATP1A3P13637 1013 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 KCNA4P22459 653 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 SLC8A1P32418 973 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 DRD3P35462 400 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 STAT1P42224 750 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 METAP1P53582 386 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 FAM193AP78312 1265 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 TYRO3Q06418 890 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 ZNF177Q13360 481 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms