RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 SPATA31D3P0C874 917 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF37AP17032 561 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ATF7P17544 494 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CMA1P23946 247 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CD40P25942 277 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 OR1G1P47890 313 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 NRG3P56975 720 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 MXRA7P84157 204 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ITIH3Q06033 890 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 GABPB1Q06547 395 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CD69Q07108 199 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 GIT2Q14161 759 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 TFDP1Q14186 410 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 UGCGQ16739 394 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PLA2G4FQ68DD2 849 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PPP4R3AQ6IN85 833 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 SPATA31D4Q6ZUB0 917 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PIK3AP1Q6ZUJ8 805 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ESPNLQ6ZVH7 1005 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC186Q7Z3E2 898 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 SRGAP1Q7Z6B7 1085 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 NEK8Q86SG6 692 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ZNF410Q86VK4 478 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 XYLT1Q86Y38 959 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PLXDC1Q8IUK5 500 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 LRRC8AQ8IWT6 810 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 HACE1Q8IYU2 909 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 C12orf76Q8N812 135 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 MRPL43Q8N983 215 aaKnown RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 SMRP1Q8NCR6 262 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PIK3C3Q8NEB9 887 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 TCP11Q8WWU5 503 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PRPF31Q8WWY3 499 aaKnown RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PSPC1Q8WXF1 523 aaKnown RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 AUTS2Q8WXX7 1259 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 TMEM143Q96AN5 459 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC34Q96HJ3 373 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 AIFM3Q96NN9 605 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 NECTIN4Q96NY8 510 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 BBC3Q96PG8 261 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 SOX7Q9BT81 388 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 APOL6Q9BWW8 343 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 TRIM6Q9C030 488 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 OXSMQ9NWU1 459 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ORC3Q9UBD5 711 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 HOOK1Q9UJC3 728 aaKnown RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ZFHX2Q9C0A1 2572 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PLXNA4Q9HCM2 1894 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 XIRP2A4UGR9 3374 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 COL4A3Q01955 1670 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CYP3A7-CYP3A51PA0A087WV96 503 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 GAGE12BA1L429 117 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 GAGE12HA6NDE8 117 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 UNC119BA6NIH7 251 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 INO80B-WBP1J3KQ70 363 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 AP5Z1O43299 807 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 ATP8B1O43520 1251 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 NRP2O60462 931 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 PPP6R2O75170 966 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 TADA2AO75478 443 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 GLP2RO95838 553 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 POMCP01189 267 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 GALTP07902 379 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 HKR1P10072 659 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 MYBP10242 640 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CDK4P11802 303 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 TNNT1P13805 278 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 GCFC2P16383 781 aaKnown RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CYP3A7P24462 503 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 AVPR2P30518 371 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 KRT2P35908 639 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 SLC11A1P49279 550 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 RAB27AP51159 221 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 RNASE9P60153 205 aaKnown RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 GUCY1B3Q02153 619 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 NHLH1Q02575 133 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CYP4A11Q02928 519 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 DMTNQ08495 405 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 SIGLEC14Q08ET2 396 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 LAMTOR4Q0VGL1 99 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 HNRNPA0Q13151 305 aaKnown RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 MRPL49Q13405 166 aaKnown RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 DRP2Q13474 957 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CTTNQ14247 550 aaKnown RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 MXD4Q14582 209 aaPredicted RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 SAFBQ15424 915 aaKnown RBP eCLIP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 PTPN14Q15678 1187 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CALCRLQ16602 461 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 TPD52L1Q16890 204 aaPredicted RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CLLU1OSQ5K130 101 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 CDCA2Q69YH5 1023 aaPredicted RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 MOXD1Q6UVY6 613 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 TMEM184AQ6ZMB5 413 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 DOK3Q7L591 496 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 MAEAQ7L5Y9 396 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 LUZP1Q86V48 1076 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 FAM177A1Q8N128 213 aaPredicted RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 SLC39A11Q8N1S5 342 aa4.27□□□□□ -1.73
ATXN3-240ENST00000556339 TDRD5Q8NAT2 981 aaKnown RBP4.27□□□□□ -1.73
ATXN3-240ENST00000556339 RNF149Q8NC42 400 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms