RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 EPN3Q9H201 632 aa11.52□□□□□ -0.57
SHMT2-216ENST00000554975 ECT2Q9H8V3 914 aa11.52□□□□□ -0.57
SHMT2-216ENST00000554975 VRTNQ9H8Y1 702 aa11.52□□□□□ -0.57
SHMT2-216ENST00000554975 APOBEC3GQ9HC16 384 aaKnown RBP11.52□□□□□ -0.57
SHMT2-216ENST00000554975 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.52□□□□□ -0.571e-9■■■■■ 76.9
SHMT2-216ENST00000554975 GRHL1Q9NZI5 618 aa11.52□□□□□ -0.57
SHMT2-216ENST00000554975 AGAP1Q9UPQ3 857 aa11.52□□□□□ -0.57
SHMT2-216ENST00000554975 RRP15Q9Y3B9 282 aaKnown RBP11.52□□□□□ -0.57
SHMT2-216ENST00000554975 UPK3BL1B0FP48 263 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 UPK3BL2E5RIL1 263 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 PIRO00625 290 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CYB561D2O14569 222 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 KIAA0754O94854 1291 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 TJP3O95049 919 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 STAU1O95793 577 aaKnown RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 F11P03951 625 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 PRB1P04280 392 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 ITGB3P05106 788 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 RARAP10276 462 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 TYMPP19971 482 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 PAX3P23760 479 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CDC25CP30307 473 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 LSP1P33241 339 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 RPL21P46778 160 aaKnown RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 SEC13P55735 322 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 LMAN2Q12907 356 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 STILQ15468 1287 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CCNG2Q16589 344 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 SV2CQ496J9 727 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 C2orf27AQ580R0 203 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 DRICH1Q6PGQ1 229 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 DCUN1D2Q6PH85 259 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 ZDHHC24Q6UX98 284 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 TMEM92Q6UXU6 159 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 MMS22LQ6ZRQ5 1243 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 ADAT2Q7Z6V5 191 aaKnown RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 ITIH5Q86UX2 942 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 TTC30AQ86WT1 665 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 SFTPA1Q8IWL2 248 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 RCOR2Q8IZ40 523 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 RIBC1Q8N443 379 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CCDC33Q8N5R6 958 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 PNPLA1Q8N8W4 532 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 OR5B17Q8NGF7 314 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 ATL2Q8NHH9 583 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 FBXO25Q8TCJ0 367 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 IPO4Q8TEX9 1081 aaKnown RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 USP33Q8TEY7 942 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 ZNF606Q8WXB4 792 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CPA5Q8WXQ8 436 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 TLCD1Q96CP7 247 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CYFIP2Q96F07 1278 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 LRIG1Q96JA1 1093 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CCDC114Q96M63 670 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 OSBPL8Q9BZF1 889 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 DCLK3Q9C098 648 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 PHACTR1Q9C0D0 580 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 NSRP1Q9H0G5 558 aaKnown RBP11.51□□□□□ -0.57
SHMT2-216ENST00000554975 LHX5Q9H2C1 402 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CENPHQ9H3R5 247 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 PPCSQ9HAB8 311 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 TDP1Q9NUW8 608 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CACNA2D2Q9NY47 1150 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 EFR3BQ9Y2G0 817 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 RAXQ9Y2V3 346 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 SNX24Q9Y343 169 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 WNT6Q9Y6F9 365 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 CFAP46Q8IYW2 2715 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 KNL1Q8NG31 2342 aa11.51□□□□□ -0.57
SHMT2-216ENST00000554975 KPNA7A9QM74 516 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 K7EQS6 105 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 SMAPO00193 183 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 RGS16O15492 202 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-216ENST00000554975 KRT1P04264 644 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 KRT7P08729 469 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 CHRM1P11229 460 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-216ENST00000554975 CD59P13987 128 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 HMGA1P17096 107 aaKnown RBP11.5□□□□□ -0.57
SHMT2-216ENST00000554975 ITPKAP23677 461 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 P2RY2P41231 377 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 PNPLA4P41247 253 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 PDCLQ13371 301 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 MAMLD1Q13495 774 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 HADHQ16836 314 aaKnown RBP11.5□□□□□ -0.57
SHMT2-216ENST00000554975 MGAT5BQ3V5L5 792 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 SLC39A12Q504Y0 691 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 KCTD16Q68DU8 428 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 SPOPLQ6IQ16 392 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 TTC27Q6P3X3 843 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 SLC23A3Q6PIS1 610 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 C11orf74Q86VG3 221 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 THEM5Q8N1Q8 247 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 SH2D3CQ8N5H7 860 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 C1orf127Q8N9H9 656 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 TTC13Q8NBP0 860 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 P3H4Q92791 437 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 CENPTQ96BT3 561 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 TTC25Q96NG3 672 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 GCNAQ96QF7 691 aa11.5□□□□□ -0.57
SHMT2-216ENST00000554975 NCAPGQ9BPX3 1015 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms