RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 NFRKBQ6P4R8 1299 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 NAPRTQ6XQN6 538 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 PIK3AP1Q6ZUJ8 805 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 RAB11FIP2Q7L804 512 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 YTHDF3Q7Z739 585 aaKnown RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 TRABD2AQ86V40 505 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 CHSY1Q86X52 802 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 ANKRD18AQ8IVF6 992 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 CLASRPQ8N2M8 674 aaKnown RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 DDX51Q8N8A6 666 aaKnown RBP eCLIP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 PNPLA1Q8N8W4 532 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 Q8N9P0 234 aaPredicted RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 GCC1Q96CN9 775 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 PAAF1Q9BRP4 392 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 THAP7Q9BT49 309 aaPredicted RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 DDX23Q9BUQ8 820 aaKnown RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 FSD1LQ9BXM9 530 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 BRD8Q9H0E9 1235 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 PABPC3Q9H361 631 aaKnown RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 TAF1DQ9H5J8 278 aaPredicted RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 SAYSD1Q9NPB0 183 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 SNX15Q9NRS6 342 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 RXFP3Q9NSD7 469 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 KIF17Q9P2E2 1029 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 SRP68Q9UHB9 627 aaKnown RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 ASAP1Q9ULH1 1129 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 NFU1Q9UMS0 254 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 DAPP1Q9UN19 280 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 BTAF1O14981 1849 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 WNK3Q9BYP7 1800 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 ALS2Q96Q42 1657 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 SPATA31A1Q5TZJ5 1347 aa1.73□□□□□ -2.13
PRPF39-208ENST00000554785 TRPM3Q9HCF6 1732 aaPredicted RBP1.73□□□□□ -2.13
PRPF39-208ENST00000554785 DHX57Q6P158 1386 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PIK3R4Q99570 1358 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ANKRD30AQ9BXX3 1397 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PPLO60437 1756 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 OVOS2A0A0G2JMS6 1433 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 OVOS2A0A0J9YW53 1432 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 OVOS2Q6IE36 1432 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM90A18PA6NE21 464 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM90A16PA6NEW6 464 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM90A9PA6NNJ1 464 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 EFCAB8A8MWE9 144 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM90A5PA8MXJ8 464 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PRRT4C9JH25 899 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PPP6R2O75170 966 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RPP40O75818 363 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM155BO75949 473 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM90A15PP0C7V4 464 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM90A14PP0C7W9 464 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 TMIGD3P0DMS9 266 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 KELP23276 732 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 EPHB2P29323 1055 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ADD2P35612 726 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PSG6Q00889 435 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 LMAN2Q12907 356 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 DNASE1L3Q13609 305 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 RPS6KA2Q15349 733 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SLC15A2Q16348 729 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ADCK5Q3MIX3 580 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF569Q5MCW4 686 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ANKRD45Q5TZF3 282 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 C11orf87Q6NUJ2 197 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SLC2A7Q6PXP3 512 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 KIRREL2Q6UWL6 708 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SLC29A4Q7RTT9 530 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF804AQ7Z570 1209 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 MOGAT3Q86VF5 341 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SFTPA1Q8IWL2 248 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SUGP1Q8IWZ8 645 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FTSJ3Q8IY81 847 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FAM71DQ8N9W8 422 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SLC22A17Q8WUG5 538 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 HMGB4Q8WW32 186 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 TBC1D5Q92609 795 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 C3orf49Q96BT1 292 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 MCRS1Q96EZ8 462 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PRR11Q96HE9 360 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZSCAN31Q96LW9 406 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 TRAPPC9Q96Q05 1148 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CINPQ9BW66 212 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 VPS16Q9H269 839 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CCDC134Q9H6E4 229 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ELAC1Q9H777 363 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SAP30LQ9HAJ7 183 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 USP29Q9HBJ7 922 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 SEPSECSQ9HD40 501 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 FBXO28Q9NVF7 368 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 TFCP2L1Q9NZI6 479 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 C19orf53Q9UNZ5 99 aaPredicted RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 CNTN6Q9UQ52 1028 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 BTBD3Q9Y2F9 522 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PCDHB7Q9Y5E2 793 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PCDHB2Q9Y5E7 798 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ZNF804BA4D1E1 1349 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 LRPPRCP42704 1394 aaKnown RBP1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PIK3C2AO00443 1686 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 ITSN1Q15811 1721 aa1.72□□□□□ -2.13
PRPF39-208ENST00000554785 PEAK1Q9H792 1746 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms