RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FAM124AQ86V42 546 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 RMDN1Q96DB5 314 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 SIPA1Q96FS4 1042 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 HAPLN3Q96S86 360 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 FEM1AQ9BSK4 669 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 TMEM74BQ9NUR3 256 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 ZNF212Q9UDV6 495 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 CAPN11Q9UMQ6 739 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 KNL1Q8NG31 2342 aa11.92□□□□□ -0.5
CCDC88C-208ENST00000554165 ATXN2Q99700 1313 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 NUP205Q92621 2012 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 IGLV3-10A0A075B6K4 115 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 A0A1W2PQJ5 194 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ZBTB24O43167 697 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 CLDN11O75508 207 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 MT-CO1P00395 513 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 GLDCP23378 1020 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ITPKAP23677 461 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 CASP14P31944 242 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 TPMTP51580 245 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ZNF143P52747 638 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 PLK1P53350 603 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 CDH4P55283 916 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 RPS14P62263 151 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ZBED6P86452 979 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 RPL6Q02878 288 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ZNF252P-AS1Q0IIN9 211 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 CSRP2Q16527 193 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 TDRD12Q587J7 1177 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 PLA2G2CQ5R387 149 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 C9orf64Q5T6V5 341 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 TTC39BQ5VTQ0 682 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 SCYL2Q6P3W7 929 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 LPCAT2Q7L5N7 544 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 SLC41A1Q8IVJ1 513 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ARFGAP1Q8N6T3 406 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 OR7D4Q8NG98 312 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 OR2T3Q8NH03 318 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 PIGKQ92643 395 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 PRCCQ92733 491 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 TOE1Q96GM8 510 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 LOXL4Q96JB6 756 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 SPACA7Q96KW9 195 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 C1orf74Q96LT6 269 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 PSMB7Q99436 277 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 NUP58Q9BVL2 599 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ITM2CQ9NQX7 267 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 NDFIP2Q9NV92 336 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 GPATCH2LQ9NWQ4 482 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 USP36Q9P275 1121 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 MYO1AQ9UBC5 1043 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 OR12D3Q9UGF7 316 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 ADAMTS1Q9UHI8 967 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 NEU3Q9UQ49 428 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 TBC1D30Q9Y2I9 924 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 PLXND1Q9Y4D7 1925 aa11.91□□□□□ -0.5
CCDC88C-208ENST00000554165 CNOT1A5YKK6 2376 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 A0A087X0T9 212 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 K7ERQ8 282 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 MOCS3O95396 460 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 ASLP04424 464 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 RHOCP08134 193 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM228BP0C875 321 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 METAP1P53582 386 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 ST8SIA6P61647 398 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 RSPO4Q2I0M5 234 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 HNRNPA1L2Q32P51 320 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 MANEALQ5VSG8 457 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 DAB2IPQ5VWQ8 1189 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 PLEKHA7Q6IQ23 1121 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 DCUN1D2Q6PH85 259 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 LRRC31Q6UY01 552 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 LINGO4Q6UY18 593 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 PRR23CQ6ZRP0 262 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 STRADAQ7RTN6 431 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 CYP2U1Q7Z449 544 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 DRC7Q8IY82 874 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 STK40Q8N2I9 435 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 ZNF557Q8N988 423 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 FRS2Q8WU20 508 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 PTPRN2Q92932 1015 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 FAM129BQ96TA1 746 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 CNPY3Q9BT09 278 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 GPR174Q9BXC1 333 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 MUC3BQ9H195 1237 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 FSCN3Q9NQT6 498 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 CNOT8Q9UFF9 292 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 SERGEFQ9UGK8 458 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 VPS28Q9UK41 221 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 LUC7L2Q9Y383 392 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 PAXBP1Q9Y5B6 917 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 ACTL7AQ9Y615 435 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 PI4KAP42356 2102 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 DOCK4Q8N1I0 1966 aa11.9□□□□□ -0.5
CCDC88C-208ENST00000554165 LAMA1P25391 3075 aa11.9□□□□□ -0.51
CCDC88C-208ENST00000554165 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 TMEM191CA6NGB0 347 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 PLK4O00444 970 aa11.89□□□□□ -0.51
CCDC88C-208ENST00000554165 SMAD6O43541 496 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms