RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 KCTD10Q9H3F6 313 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 CUEDC2Q9H467 287 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 MMRN2Q9H8L6 949 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 FZD3Q9NPG1 666 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 NYNRINQ9P2P1 1898 aaKnown RBP13.37□□□□□ -0.27
VPS29-211ENST00000553128 DOPEY2Q9Y3R5 2298 aa13.37□□□□□ -0.27
VPS29-211ENST00000553128 SPENQ96T58 3664 aaKnown RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 CDRT15L2A8MXV6 281 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 LZTS3O60299 673 aaPredicted RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 GABBR2O75899 941 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 PIAS2O75928 621 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 NR3C1P04150 777 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 SRPRAP08240 638 aaKnown RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 THEGLP0DJG4 465 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 PRLRP16471 622 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 ITGB6P18564 788 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 RBMS1P29558 406 aaKnown RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 ECT2LQ008S8 904 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 CNTN1Q12860 1018 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 OVGP1Q12889 678 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 SRSF6Q13247 344 aaKnown RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 GOLGA7BQ2TAP0 167 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 C8orf34Q49A92 452 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 ZNF542PQ5EBM4 170 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 AGBL4Q5VU57 503 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 CEP135Q66GS9 1140 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 ARHGAP17Q68EM7 881 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 FOXR1Q6PIV2 292 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 SHC4Q6S5L8 630 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 TRIM69Q86WT6 500 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 TMEM145Q8NBT3 493 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 HJURPQ8NCD3 748 aaPredicted RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 GOLGA5Q8TBA6 731 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 IFI44Q8TCB0 444 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 MAPK15Q8TD08 544 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 SEMA4DQ92854 862 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 NOX5Q96PH1 765 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 IMPG2Q9BZV3 1241 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 ABCG4Q9H172 646 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 NUCKS1Q9H1E3 243 aaKnown RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 CISHQ9NSE2 258 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 KLHL11Q9NVR0 708 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 TPX2Q9ULW0 747 aaKnown RBP13.36□□□□□ -0.27
VPS29-211ENST00000553128 DMTF1Q9Y222 760 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 ENTPD2Q9Y5L3 495 aa13.36□□□□□ -0.27
VPS29-211ENST00000553128 PRAMEF26H0Y7S4 382 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 XPO1O14980 1071 aaKnown RBP13.35□□□□□ -0.27
VPS29-211ENST00000553128 IRAK2O43187 625 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 KLRC4O43908 158 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 MAGEC1O60732 1142 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 GP1BAP07359 652 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 AFMP43652 599 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 SLC11A2P49281 568 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 NASPP49321 788 aaPredicted RBP13.35□□□□□ -0.27
VPS29-211ENST00000553128 VAMP7P51809 220 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 TAS2R38P59533 333 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 HS1BP3Q53T59 392 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 CRTC1Q6UUV9 634 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 SLC22A18ASQ8N1D0 253 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 IQUBQ8NA54 791 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 LINC00301Q8NCQ3 95 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 OR13H1Q8NG92 308 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 UBA3Q8TBC4 463 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 TMEM174Q8WUU8 243 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 ARRDC3Q96B67 414 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 IPO9Q96P70 1041 aaKnown RBP13.35□□□□□ -0.27
VPS29-211ENST00000553128 CALN1Q9BXU9 219 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 LRRC4Q9HBW1 653 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 ABCC13Q9NSE7 274 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 STARD5Q9NSY2 213 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 NLGN3Q9NZ94 848 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 ANKMY1Q9P2S6 941 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 TJP2Q9UDY2 1190 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 XPO7Q9UIA9 1087 aaKnown RBP13.35□□□□□ -0.27
VPS29-211ENST00000553128 TSPAN16Q9UKR8 245 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 CEP83Q9Y592 693 aa13.35□□□□□ -0.27
VPS29-211ENST00000553128 PVALEFA0A1B0GWK0 134 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 K7ESM1 405 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 PIK3R2O00459 728 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 SLC31A1O15431 190 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 SUV39H1O43463 412 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 LCP1P13796 627 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 SYT1P21579 422 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 CLDN2P57739 230 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 DAOAP59103 153 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 CDH18Q13634 790 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 ELAVL3Q14576 367 aaKnown RBP13.34□□□□□ -0.27
VPS29-211ENST00000553128 DRAP1Q14919 205 aaPredicted RBP13.34□□□□□ -0.27
VPS29-211ENST00000553128 CDKN3Q16667 212 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 KMT5BQ4FZB7 885 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 SETMARQ53H47 684 aaPredicted RBP13.34□□□□□ -0.27
VPS29-211ENST00000553128 DCAF6Q58WW2 860 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 MSANTD2Q6P1R3 559 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 GUSBP11Q6P575 273 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 ATG14Q6ZNE5 492 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 CLEC4CQ8WTT0 213 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 FRS2Q8WU20 508 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 EXTL1Q92935 676 aa13.34□□□□□ -0.27
VPS29-211ENST00000553128 FCRL2Q96LA5 508 aaPredicted RBP13.34□□□□□ -0.27
VPS29-211ENST00000553128 KDM4CQ9H3R0 1056 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms