RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PIM1P11309 404 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ODC1P11926 461 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ATF2P15336 505 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 TYMPP19971 482 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 TNFAIP3P21580 790 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CA4P22748 312 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 GRIA2P42262 883 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 PIK3CAP42336 1068 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CD97P48960 835 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 NTHL1P78549 312 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ZBTB16Q05516 673 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 HNRNPDQ14103 355 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 GRM2Q14416 872 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 KRT72Q14CN4 511 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CCDC142Q17RM4 750 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SOWAHAQ2M3V2 549 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SV2CQ496J9 727 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SLC44A4Q53GD3 710 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CCDC92Q53HC0 331 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 WDR44Q5JSH3 913 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ATAT1Q5SQI0 421 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 DUS1LQ6P1R4 473 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 NCCRP1Q6ZVX7 275 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SYDE1Q6ZW31 735 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 NET1Q7Z628 596 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 LRRTM3Q86VH5 581 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 TTC9BQ8N6N2 239 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 LRRC52Q8N7C0 313 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 PIP4K2CQ8TBX8 421 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SNRNP27Q8WVK2 155 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF75CPQ92670 426 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 KAT5Q92993 513 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 GFM2Q969S9 779 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 HPDLQ96IR7 371 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 DNAJC1Q96KC8 554 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 OSBPL8Q9BZF1 889 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 HCFC1R1Q9NWW0 138 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SENP1Q9P0U3 644 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 HEY2Q9UBP5 337 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 DCTN4Q9UJW0 460 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ANAPC5Q9UJX4 755 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 GRID1Q9ULK0 1009 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 FAM50BQ9Y247 325 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 A0A0G2JND7 137 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 EXOC1LA0A1B0GW35 172 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 C19orf67A6NJJ6 358 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 MAGEC1O60732 1142 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 DNAJC6O75061 913 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 OR6B1O95007 311 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 IDO1P14902 403 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CPB1P15086 417 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF24P17028 368 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CHRNB2P17787 502 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 KRT15P19012 456 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 COMTP21964 271 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SSTR3P32745 418 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 RPA3P35244 121 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 PNPLA4P41247 253 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 AP3M2P53677 418 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 MFAP3P55082 362 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 MYL6P60660 151 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 PLOD1Q02809 727 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ASPHQ12797 758 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 DCTN2Q13561 401 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SIX1Q15475 284 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 TRMT5Q32P41 509 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 LIN9Q5TKA1 542 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 RFX8Q6ZV50 586 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 OSTM1Q86WC4 334 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 RASSF3Q86WH2 238 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SCUBE1Q8IWY4 988 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ATAD1Q8NBU5 361 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ST13P5Q8NFI4 369 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CCDC110Q8TBZ0 833 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SMG7Q92540 1137 aaKnown RBP7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF560Q96MR9 790 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 NT5C1BQ96P26 610 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 TRIM55Q9BYV6 548 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 PRKD2Q9BZL6 878 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 GPR88Q9GZN0 384 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 XYLT2Q9H1B5 865 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 CYP4F11Q9HBI6 524 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 ZDHHC7Q9NXF8 308 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 GDAP2Q9NXN4 497 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 POLIQ9UNA4 740 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 SLC27A5Q9Y2P5 690 aa7.87□□□□□ -1.15
LIMA1-216ENST00000552909 MYO15AQ9UKN7 3530 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 VPS13AQ96RL7 3174 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 FAM170AA1A519 330 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 LOC730098B7Z3J9 87 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 TNFRSF10AO00220 468 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 NRG2O14511 850 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 SOAT2O75908 522 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 C1RP00736 705 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 ABHD2P08910 425 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 ACAT1P24752 427 aaKnown RBP7.86□□□□□ -1.15
LIMA1-216ENST00000552909 LMO2P25791 158 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 MAN1A1P33908 653 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 GALK1P51570 392 aa7.86□□□□□ -1.15
LIMA1-216ENST00000552909 ARFIP2P53365 341 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms