RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RNF139Q8WU17 664 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 TMEM121Q9BTD3 319 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 REEP1Q9H902 201 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 INTS10Q9NVR2 710 aaKnown RBP8.91□□□□□ -0.98
YBX3-208ENST00000540447 HPF1Q9NWY4 346 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 FAM53CQ9NYF3 392 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 ITGA11Q9UKX5 1188 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 BCLAF3A2AJT9 711 aaKnown RBP8.91□□□□□ -0.98
YBX3-208ENST00000540447 KCNK1O00180 336 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 SLC16A4O15374 487 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 METTL18O95568 372 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 ALAS1P13196 640 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 FDPSP14324 419 aaKnown RBP8.91□□□□□ -0.98
YBX3-208ENST00000540447 MED22Q15528 200 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 C1orf189Q5VU69 101 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 STOX1Q6ZVD7 989 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 OR6B3Q8NGW1 331 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 SPPL2AQ8TCT8 520 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 RCN3Q96D15 328 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 MTMR9Q96QG7 549 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 RACGAP1Q9H0H5 632 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 ZNF304Q9HCX3 659 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 CLN6Q9NWW5 311 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 DNAJB4Q9UDY4 337 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 VPS51Q9UID3 782 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 POFUT2Q9Y2G5 429 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 TRPM2O94759 1503 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 RFX7Q2KHR2 1363 aa8.91□□□□□ -0.98
YBX3-208ENST00000540447 C9IYK1 514 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 MAGEB3O15480 346 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 PRMT3O60678 531 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 TBX10O75333 385 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 GJB6O95452 261 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 HOXC9P31274 260 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 SDC2P34741 201 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 HTR2BP41595 481 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 PTGER2P43116 358 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 CTSWP56202 376 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 BST1Q10588 318 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 KCTD2Q14681 263 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 TIGD2Q4W5G0 525 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 CCNYL2Q5T2Q4 361 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 SLC2A7Q6PXP3 512 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 FAM92BQ6ZTR7 304 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 ZNF571Q7Z3V5 609 aaPredicted RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 UBE2J2Q8N2K1 259 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 ZCCHC9Q8N567 271 aaKnown RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 STARD8Q92502 1023 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 CRELD1Q96HD1 420 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 LRRC4BQ9NT99 713 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 ZNF518AQ6AHZ1 1483 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 MYMKA6NI61 221 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 POLRMTO00411 1230 aaKnown RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 KPNA6O60684 536 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 TCEA1P23193 301 aaKnown RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 CDC42P60953 191 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 RFX4Q33E94 735 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 XKR5Q6UX68 686 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 C18orf25Q96B23 403 aaPredicted RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 AIFM2Q9BRQ8 373 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 EPB41L4BQ9H329 900 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 SYNDIG1Q9H7V2 258 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 FANCFQ9NPI8 374 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 NDUFS2O75306 463 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 RECQL5O94762 991 aaPredicted RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 RFC4P35249 363 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 SLC16A2P36021 539 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 ELK3P41970 407 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 RPL14P50914 215 aaKnown RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 THOP1P52888 689 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 SSX2Q16385 188 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 COLEC12Q5KU26 742 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 FAM160B1Q5W0V3 765 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 KCTD1Q719H9 257 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 ACSF2Q96CM8 615 aaPredicted RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 SLC9A7Q96T83 725 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 CHCHD6Q9BRQ6 235 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 PCDH9Q9HC56 1237 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 KRCC1Q9NPI7 259 aaPredicted RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 MTF2Q9Y483 593 aaPredicted RBP8.9□□□□□ -0.98
YBX3-208ENST00000540447 ASXL2Q76L83 1435 aa8.9□□□□□ -0.98
YBX3-208ENST00000540447 PNMA6FA0A0J9YX94 578 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 FAM205CA6NFA0 338 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 C2orf74A8MZ97 194 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 H3BN98 237 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 RELAQ04206 551 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 MAB21L1Q13394 359 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 PADI6Q6TGC4 694 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 SYNPOQ8N3V7 929 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 SLC22A8Q8TCC7 542 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 SLC5A5Q92911 643 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 ARPC5LQ9BPX5 153 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 CHST12Q9NRB3 414 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 ADPRHL2Q9NX46 363 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 CYTH4Q9UIA0 394 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 RGS10O43665 173 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 AIREO43918 545 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 NDUFS3O75489 264 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 C9P02748 559 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 CCNB1P14635 433 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms