RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 XAB2Q9HCS7 855 aaKnown RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 HCSTQ9UBK5 93 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 VANGL2Q9ULK5 521 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 TBX18O95935 607 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 GSRP00390 522 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 KCNE1P15382 129 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 MAGEA3P43357 314 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 CAP1Q01518 475 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 PDK1Q15118 436 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 MORN1Q5T089 497 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 ZNF467Q7Z7K2 595 aaPredicted RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 DENND6AQ8IWF6 608 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 TTC39CQ8N584 583 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 FBXO41Q8TF61 875 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 OSBPL1AQ9BXW6 950 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 SLC2A6Q9UGQ3 507 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 ARHGAP42A6NI28 874 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 GJB3O75712 270 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 STK10O94804 968 aaKnown RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 BAG2O95816 211 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 CCND1P24385 295 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 PGM1P36871 562 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 SARNPP82979 210 aaKnown RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 SEPT6Q14141 434 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 DDR2Q16832 855 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 NAPRTQ6XQN6 538 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 LDB1Q86U70 411 aaPredicted RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 ZDHHC17Q8IUH5 632 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 TTC1Q99614 292 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 ADAM2Q99965 735 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 SNX15Q9NRS6 342 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 ABI2Q9NYB9 513 aaPredicted RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 PADI3Q9ULW8 664 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 DERAQ9Y315 318 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 TK2O00142 265 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 XPOTO43592 962 aaKnown RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 DAB1O75553 588 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 ZFXP17010 805 aaPredicted RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 PTDSS1P48651 473 aaKnown RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 SLC1A6P48664 564 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 NR2C2P49116 596 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 ITGA7Q13683 1181 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 FSTL4Q6MZW2 842 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 TTC9BQ8N6N2 239 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 PTCD3Q96EY7 689 aaKnown RBP17.3■□□□□ 0.36
USP28-208ENST00000540438 CERS2Q96G23 380 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 RTP3Q9BQQ7 232 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 BTBD10Q9BSF8 475 aa17.3■□□□□ 0.36
USP28-208ENST00000540438 DCLK1O15075 740 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 HOXD8P13378 290 aaPredicted RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 SLC18A1P54219 525 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 MRPS6P82932 125 aaKnown RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 OCRLQ01968 901 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 DPYSQ14117 519 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 MCUQ8NE86 351 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CXorf56Q9H5V9 222 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 HBS1LQ9Y450 684 aaKnown RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 AURKAO14965 403 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CHRNGP07510 517 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 TPBGLP0DKB5 382 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 GRK4P32298 578 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 GRIK1P39086 918 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 PNPLA4P41247 253 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 ITKQ08881 620 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CCDC15Q0P6D6 951 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CRHR2Q13324 411 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 TEX9Q8N6V9 391 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CNTD1Q8N815 330 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 SMC1BQ8NDV3 1235 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 MICAL1Q8TDZ2 1067 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 WDR55Q9H6Y2 383 aaPredicted RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 TRDMT1O14717 391 aaKnown RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 NDC80O14777 642 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 MT-CO1P00395 513 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 POLBP06746 335 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 TPSB2P20231 275 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 WARSP23381 471 aaKnown RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 MPP1Q00013 466 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 TPSAB1Q15661 275 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 TEX44Q53QW1 395 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 LRRC8BQ6P9F7 803 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 C4orf50Q6ZRC1 276 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 MAVSQ7Z434 540 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CIR1Q86X95 450 aaPredicted RBP17.29■□□□□ 0.36
USP28-208ENST00000540438 RNF148Q8N7C7 305 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 CDKL2Q92772 493 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 KLHL5Q96PQ7 755 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 RNPEPL1Q9HAU8 725 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 NOD1Q9Y239 953 aa17.29■□□□□ 0.36
USP28-208ENST00000540438 PPP1R12AO14974 1030 aaPredicted RBP17.28■□□□□ 0.36
USP28-208ENST00000540438 CCDC22O60826 627 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 SPAG6O75602 509 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 FGF3P11487 239 aaPredicted RBP17.28■□□□□ 0.36
USP28-208ENST00000540438 PCLAFQ15004 111 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 PNPLA8Q9NP80 782 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 VAPBO95292 243 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 PRKCGP05129 697 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 RASSF2P50749 326 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 RIPK1Q13546 671 aa17.28■□□□□ 0.36
USP28-208ENST00000540438 TEDDM1Q5T9Z0 273 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms