RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.23■□□□□ 0.03
USP28-204ENST00000537642 DRGXA6NNA5 263 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 TTC34A8MYJ7 566 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 SIN3BO75182 1162 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 CLDN11O75508 207 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 PTMSP20962 102 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 OXTRP30559 389 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 STK19P49842 368 aaPredicted RBP15.23■□□□□ 0.03
USP28-204ENST00000537642 CDH4P55283 916 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 OXCT1P55809 520 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 ZNF177Q13360 481 aaPredicted RBP15.23■□□□□ 0.03
USP28-204ENST00000537642 ARID5BQ14865 1188 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 NR1I3Q14994 352 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 C15orf59Q2T9L4 293 aaPredicted RBP15.23■□□□□ 0.03
USP28-204ENST00000537642 ALFQ53S48 1182 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 SH3PXD2AQ5TCZ1 1133 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 STPG1Q5TH74 334 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 MON1BQ7L1V2 547 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 RPL10LQ96L21 214 aaKnown RBP15.23■□□□□ 0.03
USP28-204ENST00000537642 C1orf74Q96LT6 269 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 HAPLN3Q96S86 360 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 EDEM2Q9BV94 578 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 GPR174Q9BXC1 333 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 TBC1D30Q9Y2I9 924 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 OR51B4Q9Y5P0 310 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 ADAMTS9Q9P2N4 1935 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 CNOT1A5YKK6 2376 aaKnown RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 IGLV3-10A0A075B6K4 115 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 TCRBV5S1A1TA0A578 114 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 LRRC53A6NM62 1247 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 SERPINC1P01008 464 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 CALB1P05937 261 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 CCDC172P0C7W6 258 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 KRT3P12035 628 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 SDC4P31431 198 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 RFC1P35251 1148 aaPredicted RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 HOXD12P35452 270 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 DPP6P42658 865 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 PTPN9P43378 593 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 SULT2A1Q06520 285 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 C1QBPQ07021 282 aaKnown RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 CDO1Q16878 200 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 TRIM61Q5EBN2 209 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 C9orf64Q5T6V5 341 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 RNF219Q5W0B1 726 aaPredicted RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 E4F1Q66K89 784 aaPredicted RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 ZNF776Q68DI1 518 aaPredicted RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 FAM124AQ86V42 546 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 C3orf20Q8ND61 904 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 FEM1AQ9BSK4 669 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 NUP58Q9BVL2 599 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 TTYH3Q9C0H2 523 aa15.22■□□□□ 0.03
USP28-204ENST00000537642 RSPH9Q9H1X1 276 aaPredicted RBP15.22■□□□□ 0.03
USP28-204ENST00000537642 EDDM13A0A1B0GTR0 161 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 TARSL2A2RTX5 802 aaKnown RBP15.21■□□□□ 0.03
USP28-204ENST00000537642 E9PAM4 449 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 TM4SF5O14894 197 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 FANCCQ00597 558 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 ZBTB16Q05516 673 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 ZSCAN23Q3MJ62 389 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 ACBD5Q5T8D3 534 aaPredicted RBP15.21■□□□□ 0.03
USP28-204ENST00000537642 ACAD10Q6JQN1 1059 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 SLC23A3Q6PIS1 610 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 WDR59Q6PJI9 974 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 LRRC31Q6UY01 552 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 STRADAQ7RTN6 431 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 CADM4Q8NFZ8 388 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 CENPIQ92674 756 aaPredicted RBP15.21■□□□□ 0.03
USP28-204ENST00000537642 PTPRN2Q92932 1015 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 FOXJ1Q92949 421 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 SELENOOQ9BVL4 669 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 TAS2R14Q9NYV8 317 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 MPP6Q9NZW5 540 aa15.21■□□□□ 0.03
USP28-204ENST00000537642 CACNA1EQ15878 2313 aa15.21■□□□□ 0.02
USP28-204ENST00000537642 PCDH15Q96QU1 1955 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 ASCC3Q8N3C0 2202 aaKnown RBP15.2■□□□□ 0.02
USP28-204ENST00000537642 MED19A0JLT2 244 aaPredicted RBP15.2■□□□□ 0.02
USP28-204ENST00000537642 SIGLEC16A6NMB1 481 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 C4orf47A7E2U8 309 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 CDX4O14627 284 aaPredicted RBP15.2■□□□□ 0.02
USP28-204ENST00000537642 SRGAP2O75044 1071 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 DNTTP04053 509 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 CFIP05156 583 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 RHOCP08134 193 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 VAV1P15498 845 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 TNFAIP3P21580 790 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 MAOBP27338 520 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 ACSL1P33121 698 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 ADRA1BP35368 520 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 VASPP50552 380 aaPredicted RBP15.2■□□□□ 0.02
USP28-204ENST00000537642 HDAC4P56524 1084 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 FOXK2Q01167 660 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 ASIC2Q16515 512 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 DUOXA1Q1HG43 343 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 SYCP2LQ5T4T6 812 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 IL31Q6EBC2 164 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 TFAP2DQ7Z6R9 452 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 RGL4Q8IZJ4 473 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 MCOLN2Q8IZK6 566 aa15.2■□□□□ 0.02
USP28-204ENST00000537642 CEP76Q8TAP6 659 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms