RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IGF2RP11717 2491 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 A0A1B0GVM2 712 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 A0A1W2PPC4 97 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 TCAF2A6NFQ2 919 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 BECN2A8MW95 431 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 H0Y8X5 98 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 PES1O00541 588 aaKnown RBP15.19■□□□□ 0.02
VPS28-215ENST00000531924 IGHV4-34P06331 123 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 ZNF18P17022 549 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 STK19P49842 368 aaPredicted RBP15.19■□□□□ 0.02
VPS28-215ENST00000531924 BPIFB4P59827 614 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 PITX1P78337 314 aaPredicted RBP15.19■□□□□ 0.02
VPS28-215ENST00000531924 APBA1Q02410 837 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 ELAVL3Q14576 367 aaKnown RBP15.19■□□□□ 0.02
VPS28-215ENST00000531924 SLC45A4Q5BKX6 768 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 FAM183BPQ6ZVS7 135 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 SLCO6A1Q86UG4 719 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 C1orf131Q8NDD1 294 aaKnown RBP15.19■□□□□ 0.02
VPS28-215ENST00000531924 SLC6A18Q96N87 628 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 SLC2A13Q96QE2 648 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 SERGEFQ9UGK8 458 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 DNAJC12Q9UKB3 198 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 TPX2Q9ULW0 747 aaKnown RBP15.19■□□□□ 0.02
VPS28-215ENST00000531924 PCDHGC3Q9UN70 934 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 CFAP47Q6ZTR5 3102 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 AKAP13Q12802 2813 aa15.19■□□□□ 0.02
VPS28-215ENST00000531924 ITIH6Q6UXX5 1313 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3DA0A087WVF3 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3IA0A087WXS9 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3EA0A087X179 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3KA0A087X1G2 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3FA6NER0 549 aaPredicted RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3LB9A6J9 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 M0QYT0 321 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 VILLO15195 856 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 ATXN1LP0C7T5 689 aaKnown RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3HP0C7X1 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 PRKCSHP14314 528 aaPredicted RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 MZF1P28698 734 aaPredicted RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 CTSKP43235 329 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 CCR5P51681 352 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 IL9RQ01113 521 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 SLC6A3Q01959 620 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 SCAPQ12770 1279 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 AUHQ13825 339 aaKnown RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 MAN2A1Q16706 1144 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 FAM46CQ5VWP2 391 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3GQ6DHY5 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3CQ6IPX1 549 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 FBXL22Q6P050 247 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 TBC1D3Q8IZP1 549 aaPredicted RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 WDTC1Q8N5D0 677 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 OR8D1Q8WZ84 308 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 SERAC1Q96JX3 654 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 SPAG5Q96R06 1193 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 SIK2Q9H0K1 926 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 ADAMTS1Q9UHI8 967 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 DACH1Q9UI36 760 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 VPS28Q9UK41 221 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 RALYQ9UKM9 306 aaKnown RBP15.18■□□□□ 0.02
VPS28-215ENST00000531924 VANGL2Q9ULK5 521 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 PAXBP1Q9Y5B6 917 aa15.18■□□□□ 0.02
VPS28-215ENST00000531924 TNFSF14O43557 240 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 PCDHGA12O60330 932 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 CD38P28907 300 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 NOS2P35228 1153 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 RNASE9P60153 205 aaKnown RBP15.17■□□□□ 0.02
VPS28-215ENST00000531924 CENPCQ03188 943 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 RAPGEF1Q13905 1077 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 SMYD5Q6GMV2 418 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 CCNI2Q6ZMN8 369 aaPredicted RBP15.17■□□□□ 0.02
VPS28-215ENST00000531924 DBX2Q6ZNG2 339 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 PRPF39Q86UA1 669 aaKnown RBP15.17■□□□□ 0.02
VPS28-215ENST00000531924 ZDHHC17Q8IUH5 632 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 AADATQ8N5Z0 425 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 TMEM35BQ8NCS4 154 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 PTPRN2Q92932 1015 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 FAM129BQ96TA1 746 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 PRMT1Q99873 361 aaKnown RBP15.17■□□□□ 0.02
VPS28-215ENST00000531924 MUC3BQ9H195 1237 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 CCDC86Q9H6F5 360 aaKnown RBP15.17■□□□□ 0.02
VPS28-215ENST00000531924 GDF3Q9NR23 364 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 RRN3Q9NYV6 651 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 FTSJ1Q9UET6 329 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 STAP1Q9ULZ2 295 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 BTBD3Q9Y2F9 522 aa15.17■□□□□ 0.02
VPS28-215ENST00000531924 MUC22E2RYF6 1773 aaPredicted RBP15.16■□□□□ 0.02
VPS28-215ENST00000531924 C1QTNF3-AMACRE9PGA6 284 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 FOXN3O00409 490 aaPredicted RBP15.16■□□□□ 0.02
VPS28-215ENST00000531924 BNIP3LO60238 219 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 PAGE1O75459 146 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 CLDN11O75508 207 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 DAB1O75553 588 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 ERBB2P04626 1255 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 ITGAVP06756 1048 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 ARRB1P49407 418 aaPredicted RBP15.16■□□□□ 0.02
VPS28-215ENST00000531924 PLK1P53350 603 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 ADPRHP54922 357 aa15.16■□□□□ 0.02
VPS28-215ENST00000531924 VWA3BQ502W6 1294 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms