RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 VAV1P15498 845 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 MZF1P28698 734 aaPredicted RBP24.34■■□□□ 1.49
CPSF1-202ENST00000527827 EPHA8P29322 1005 aaPredicted RBP24.34■■□□□ 1.49
CPSF1-202ENST00000527827 DRD3P35462 400 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 ACADVLP49748 655 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 NUMBP49757 651 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 NXPH1P58417 271 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 PPP2CBP62714 309 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 PPP2CAP67775 309 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 RNF219Q5W0B1 726 aaPredicted RBP24.34■■□□□ 1.49
CPSF1-202ENST00000527827 ISM2Q6H9L7 571 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 CHSY1Q86X52 802 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 EID2Q8N6I1 236 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 EHBP1Q8NDI1 1231 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 DHTKD1Q96HY7 919 aaPredicted RBP24.34■■□□□ 1.49
CPSF1-202ENST00000527827 SLC4A5Q9BY07 1137 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 CYTH4Q9UIA0 394 aa24.34■■□□□ 1.49
CPSF1-202ENST00000527827 GCN1Q92616 2671 aaKnown RBP24.34■■□□□ 1.49
CPSF1-202ENST00000527827 TLR4O00206 839 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 CAPN9O14815 690 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 YKT6O15498 198 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 RFPL3O75679 317 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 IL1BP01584 269 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 C1SP09871 688 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 ACADSBP45954 432 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 METAP1P53582 386 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 PITX1P78337 314 aaPredicted RBP24.33■■□□□ 1.49
CPSF1-202ENST00000527827 CETN1Q12798 172 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 EIF4EBP2Q13542 120 aaPredicted RBP24.33■■□□□ 1.49
CPSF1-202ENST00000527827 ELAVL3Q14576 367 aaKnown RBP24.33■■□□□ 1.49
CPSF1-202ENST00000527827 TTI2Q6NXR4 508 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 TSC1Q92574 1164 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 FAM131CQ96AQ9 280 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 BTN2A3PQ96KV6 586 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 PRMT1Q99873 361 aaKnown RBP24.33■■□□□ 1.49
CPSF1-202ENST00000527827 TJP2Q9UDY2 1190 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 TPX2Q9ULW0 747 aaKnown RBP24.33■■□□□ 1.49
CPSF1-202ENST00000527827 BPTFQ12830 3046 aa24.33■■□□□ 1.49
CPSF1-202ENST00000527827 TRUB2O95900 331 aaKnown RBP24.32■■□□□ 1.48
CPSF1-202ENST00000527827 JUPP14923 745 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 BNIP3Q12983 259 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 STIM1Q13586 685 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP24.32■■□□□ 1.48
CPSF1-202ENST00000527827 KANSL1Q7Z3B3 1105 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 SPATS2Q86XZ4 545 aaKnown RBP24.32■■□□□ 1.48
CPSF1-202ENST00000527827 STK32AQ8WU08 396 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 NXPE2Q96DL1 559 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 DCBLD2Q96PD2 775 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 TRIM62Q9BVG3 475 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 ERVMER34-1Q9H9K5 563 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 SHROOM3Q8TF72 1996 aa24.32■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3DA0A087WVF3 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3IA0A087WXS9 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3EA0A087X179 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3KA0A087X1G2 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3FA6NER0 549 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3LB9A6J9 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 E5RJQ4 531 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3HP0C7X1 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 CDK4P11802 303 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 PDGFRAP16234 1089 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 HNF1BP35680 557 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 RXRGP48443 463 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 ARRB1P49407 418 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-202ENST00000527827 PLK1P53350 603 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 SLC12A1Q13621 1099 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 SLC45A4Q5BKX6 768 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 SFMBT2Q5VUG0 894 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3GQ6DHY5 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3CQ6IPX1 549 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 NAPEPLDQ6IQ20 393 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TMEM110Q86TL2 294 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 CIR1Q86X95 450 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-202ENST00000527827 TBC1D3Q8IZP1 549 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-202ENST00000527827 CCAR2Q8N163 923 aaKnown RBP24.31■■□□□ 1.48
CPSF1-202ENST00000527827 FRS2Q8WU20 508 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 POPDC2Q9HBU9 364 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 ARHGAP20Q9P2F6 1191 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 MAN1B1Q9UKM7 699 aa24.31■■□□□ 1.48
CPSF1-202ENST00000527827 KCNU1A8MYU2 1149 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 F5H5T6 163 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 YWHAZP63104 245 aaKnown RBP24.3■■□□□ 1.48
CPSF1-202ENST00000527827 NUCB2P80303 420 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 MEA1Q16626 185 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 CXorf57Q6NSI4 855 aaKnown RBP24.3■■□□□ 1.48
CPSF1-202ENST00000527827 FBXL19Q6PCT2 694 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 MFSD2AQ8NA29 543 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 TIGD1Q96MW7 591 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 SPAG5Q96R06 1193 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 SARDHQ9UL12 918 aa24.3■■□□□ 1.48
CPSF1-202ENST00000527827 TLX3O43711 291 aaPredicted RBP24.29■■□□□ 1.48
CPSF1-202ENST00000527827 RTN2O75298 545 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 KRT5P13647 590 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 NNMTP40261 264 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 ABCG1P45844 678 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 SULT2A1Q06520 285 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 KCNH2Q12809 1159 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 TARDBPQ13148 414 aaKnown RBP eCLIP24.29■■□□□ 1.48
CPSF1-202ENST00000527827 TAF5Q15542 800 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 C6orf118Q5T5N4 469 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms